Table 1.
metabolic pathway | in vitro evidence | fixed cell evidence (†colocalization) | live cell evidence († colocalization) | organism |
---|---|---|---|---|
glucose metabolism | mass spectrometry26 | immunofluorescence microscopy,25 transmission electron microscopy24,25 | fluorescence microscopy25 | Trypanosomatida |
co-immunoprecipitation7,38,39 mass spectrometry7,38,39 |
plants | |||
co-immunoprecipitation34 | fluorescence microscopy33 | yeast | ||
Immunofluorescence microscopy43,44 | fly | |||
enzyme inhibitor-binding assays47 | immunofluorescence microscopy46,48† | mammal (erythrocyte) | ||
immunofluorescence microscopy52,53 | fluorescence microscopy53†, fluorescence recovery after photobleaching,53 intracellular fluorescence resonance energy transfer53† | human (cancer cells) | ||
pyruvate metabolism | cryoelectron microscopy55 | mammal | ||
surface plasmon resonance56 | immunofluorescence microscopy62,63 | human (cancer cells) | ||
TCA cycle | bacterial two-hybrid analysis,67 strep-protein interaction experiment,67,73 in vitro reconstitution68 | bacteria | ||
cross-linking and mass spectrometry,70 diffusion analysis71 | fluorescence recovery after photobleaching69 | mammal | ||
mitochondrial oxidative phosphorylation | native PAGE gel75 | yeast | ||
proteomic mapping81 | fly | |||
cryoelectron microscopy76 | mammal | |||
proteomic mapping6,80 | human (embryonic kidney) | |||
purine biosynthesis | Tango assay91 | fluorescence microscopy88,94†, fluorescence recovery after photobleaching92 | human (cancer cells) | |
pyrimidine biosynthesis | cryoelectron microscopy113 | immunofluorescence microscopy113 | bacteria | |
immunofluorescence microscopy114 | fluorescence microscopy116 | yeast | ||
immunofluorescence microscopy112 | fly | |||
immunofluorescence microscopy124 | mammal | |||
immunofluorescence microscopy102,114 | human (cancer cells) | |||
fatty acid synthesis | X-ray crystallography128 | bacteria | ||
X-ray crystallography,129 cryoelectron microscopy130 | immunofluorescence microscopy132 | fluorescence microscopy132 | yeast | |
single particle cryoelectron microscopy131 | mammal | |||
bioluminescence resonance energy transfer133† | human (cancer cells) | |||
natural product biosynthesis | mass spectrometry144 | fluorescence microscopy144† | bacteria | |
co-immunoprecipitiation140 | immunofluorescence microscopy142 | fluorescence microscopy139,140† | fungus | |
amino acid metabolism | X-ray crystallography153,155 | bacteria | ||
mass spectrometry156,157 | mammal |