TABLE 3.
Study | Platform | Cancer type | No. of samples |
No. of genes selected by Lasso regularization using AICc | P value (log rank) | Corrected P value (false-discovery rate) | ||
---|---|---|---|---|---|---|---|---|
Total | High risk | Low risk | ||||||
GSE32062 | GPL6480 | Ovarian | 260 | 51 | 209 | 22 | 2.28E−11 | 2.62E−10 |
GSE30219 | GPL570 | Lung | 289 | 230 | 59 | 21 | 4.04E−09 | 3.10E−08 |
GSE1456 | GPL97 | Breast | 159 | 64 | 95 | 8 | 6.06E−09 | 3.98E−08 |
GSE22153 | GPL6102 | Skin | 54 | 16 | 38 | 8 | 9.41E−09 | 5.41E−08 |
GSE22762 | GPL97 | Heme | 30 | 1 | 29 | 6 | 7.24E−08 | 3.33E−07 |
GSE4412 | GPL97 | Brain | 85 | 1 | 84 | 13 | 2.85E−07 | 1.09E−06 |
GSE4271 | GPL97 | Brain | 77 | 10 | 67 | 20 | 3.41E−07 | 1.21E−06 |
GSE14333 | GPL570 | Colorectal | 226 | 2 | 224 | 14 | 1.44E−06 | 4.74E−06 |
GSE4922 | GPL96 | Breast | 242 | 19 | 223 | 8 | 1.53E−05 | 4.68E−05 |
GSE21501 | GPL4133 | Pancreas | 102 | 67 | 35 | 9 | 3.12E−05 | 8.96E−05 |
GSE42669 | GPL6244 | Brain | 55 | 1 | 54 | 2 | 4.43E−05 | 0.000119 |
GSE9195 | GPL570 | Breast | 77 | 37 | 40 | 26 | 4.64E−05 | 0.000119 |
GSE3494 | GPL97 | Breast | 234 | 185 | 49 | 7 | 7.61E−05 | 0.000184 |
GSE8842 | GPL5689 | Ovarian | 82 | 48 | 34 | 30 | 0.000167 | 0.000384 |
GSE17260 | GPL6480 | Ovarian | 110 | 56 | 54 | 2 | 0.000263 | 0.000576 |
GSE37418 | GPL570 | Brain | 73 | 57 | 16 | 4 | 0.000428 | 0.000895 |
GSE1379 | GPL1223 | Breast | 60 | 35 | 25 | 3 | 0.000843 | 0.001687 |
GSE13213 | GPL6480 | Lung | 117 | 42 | 75 | 4 | 0.001022 | 0.001923 |
GSE32063 | GPL6480 | Ovarian | 40 | 33 | 7 | 4 | 0.001045 | 0.001923 |
GSE17710 | GPL9053 | Lung | 56 | 5 | 51 | 3 | 0.001087 | 0.001923 |
GSE9893 | GPL5049 | Breast | 155 | 18 | 137 | 3 | 0.001171 | 0.001994 |
GSE18229 | GPL887 | Breast | 53 | 1 | 52 | 4 | 0.001946 | 0.003197 |
GSE425 | GPL317 | Breast | 22 | 15 | 7 | 6 | 0.005002 | 0.007669 |
GSE13041 | GPL8300 | Brain | 49 | 46 | 3 | 4 | 0.007634 | 0.010973 |
GSE3 | GPL10 | Adrenal | 32 | 18 | 14 | 6 | 0.015127 | 0.021087 |
GSE6532 | GPL96 | Breast | 306 | 129 | 177 | 8 | 0.017094 | 0.023127 |
GSE18229 | GPL885 | Breast | 13 | 1 | 12 | 2 | 0.019016 | 0.023769 |
GSE19234 | GPL570 | Skin | 44 | 40 | 4 | 44 | 0.141582 | 0.155066 |
GSE4412 | GPL96 | Brain | 85 | 84 | 1 | 4 | 0.280437 | 0.293184 |
GSE14814 | GPL96 | Lung | 133 | 132 | 1 | 2 | 0.401377 | 0.410296 |