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. 2017 Jul 8;7(16):6390–6403. doi: 10.1002/ece3.2985

Table 1.

Protein‐coding thermal adaptation loci in Anolis cybotes populations

RAD ID SNP pos (Genomic location) z‐Score P Human gene symbol Human gene function Clinical relevance Loc E value annotation ID %
54986 62 (GL344061.1:58534‐58623) −5.26 1.9E‐7 GLTSCR2 Mitochondrial oxygen consumption1
Glioma suppressor
I 6.7E‐44 100
58260 35 (AAWZ02041818:5129‐5204) −5.43 7.47E‐8 SIRT6 Histone modification
Tumor suppressor
Aging, Hypoxia
E 7.4E‐35 97
69162 39, 66 (4:134669884‐134669973) −5.14
−4.96
3.58E‐7 PHF20 Histone modification
Medulloblastoma
trI 5.1E‐39 96
87564 63; 78 (2:119357203‐119357268) −5.12
−5.26
4.09E‐7 ASF1B Histone Chaperone trI 1E‐10 88
91548 89 (GL343952.1:63056‐63145) −5.91 4E‐6 DYNC1H1* Cell Movement
CNS movement
Axon Myelination2
Brain malformation
E 8.9E‐40 94
9501 34, 42, 70 (5: 132959521‐132959610) −5.01
−4.95
−4.97
6E‐6 LRBA Immune system
Immune deficiency w. Autoimmunity; IBS
I 4.4E‐40 94
52394 19, 29 (2:134658466‐134658555) −5.60
−5.12
4E‐7 MFSD6 Solute Carrier I/E 1.8E‐35 89
10221 89 (GL343426.1:503906‐503995) −5.91 1E‐7 MROH7/
HEATR8*
Unknown E 2.1E‐36 90
85436 43 (GL343638.1:258914‐25900) −5.49 5.8E‐7 RAP1GAP2 Endothelial damage repair
Asthma 3
I 8.2E‐29 84
76510 9, 27, 40 (1:231382954‐231383015) −4.91
−5.73
−5.41
8E‐7 RASGRP3 RAS activation
Upregulated in cancer
I 4.2E‐24 94
72187 17 (GL343258.1:709115‐709204) −5.06 3E‐6 SOX9 Skeletal development
Campomelic dysplasia
I/E 3.2E‐41 96
13877 30 (GL343709.1:169329‐169348) −5.41 8E‐7 UBE4B Protein ubiquitination
Neuroblastoma suppressor
I 3.8E‐03 100
27048 71 (1:263596451‐263596540) −5.42 7E‐7 SPTBN1 Cell adhesion
Bone mineral density4
Cardiac Arrhythmia, Bone fracture risk
E 2.0E‐43 99
65181 65, 77, 83 (6:21689596‐21689685) −6.18
−5.42
−4.79
8E‐6 CALCR Calcium excretion
Ossification
Osteoporosis
E 2.6E‐42 98

SNPs assigned to protein‐coding outlier loci. ID % refers to sequence similarity with A. carolinensis reference genome. Significance level adjusted with false‐positive discovery rate at p < .007. P = p‐value of outlier. Loc = SNP location: I—Intron, E—Exon, trI—transcribed Intron (RNA reads were observed via ENSEMBL.org). Clinical relevance was obtained from OMIM and PubMed, both for animal model and human. Table references (superscript numbers): (1) Yoon et al., 2014; (2) Yang et al., 2015; (3) Myers et al., 2014; (4) Estrada et al., 2012. *Not in Interactome.