Table 1.
RAD ID | SNP pos (Genomic location) | z‐Score | P | Human gene symbol | Human gene function Clinical relevance | Loc | E value annotation | ID % |
---|---|---|---|---|---|---|---|---|
54986 | 62 (GL344061.1:58534‐58623) | −5.26 | 1.9E‐7 | GLTSCR2 |
Mitochondrial oxygen consumption1
Glioma suppressor |
I | 6.7E‐44 | 100 |
58260 | 35 (AAWZ02041818:5129‐5204) | −5.43 | 7.47E‐8 | SIRT6 |
Histone modification Tumor suppressor Aging, Hypoxia |
E | 7.4E‐35 | 97 |
69162 | 39, 66 (4:134669884‐134669973) |
−5.14 −4.96 |
3.58E‐7 | PHF20 |
Histone modification Medulloblastoma |
trI | 5.1E‐39 | 96 |
87564 | 63; 78 (2:119357203‐119357268) |
−5.12 −5.26 |
4.09E‐7 | ASF1B | Histone Chaperone | trI | 1E‐10 | 88 |
91548 | 89 (GL343952.1:63056‐63145) | −5.91 | 4E‐6 | DYNC1H1* |
Cell Movement CNS movement Axon Myelination2 Brain malformation |
E | 8.9E‐40 | 94 |
9501 | 34, 42, 70 (5: 132959521‐132959610) |
−5.01 −4.95 −4.97 |
6E‐6 | LRBA |
Immune system Immune deficiency w. Autoimmunity; IBS |
I | 4.4E‐40 | 94 |
52394 | 19, 29 (2:134658466‐134658555) |
−5.60 −5.12 |
4E‐7 | MFSD6 | Solute Carrier | I/E | 1.8E‐35 | 89 |
10221 | 89 (GL343426.1:503906‐503995) | −5.91 | 1E‐7 |
MROH7/ HEATR8* |
Unknown | E | 2.1E‐36 | 90 |
85436 | 43 (GL343638.1:258914‐25900) | −5.49 | 5.8E‐7 | RAP1GAP2 |
Endothelial damage repair Asthma 3 |
I | 8.2E‐29 | 84 |
76510 | 9, 27, 40 (1:231382954‐231383015) |
−4.91 −5.73 −5.41 |
8E‐7 | RASGRP3 |
RAS activation Upregulated in cancer |
I | 4.2E‐24 | 94 |
72187 | 17 (GL343258.1:709115‐709204) | −5.06 | 3E‐6 | SOX9 |
Skeletal development Campomelic dysplasia |
I/E | 3.2E‐41 | 96 |
13877 | 30 (GL343709.1:169329‐169348) | −5.41 | 8E‐7 | UBE4B |
Protein ubiquitination Neuroblastoma suppressor |
I | 3.8E‐03 | 100 |
27048 | 71 (1:263596451‐263596540) | −5.42 | 7E‐7 | SPTBN1 |
Cell adhesion Bone mineral density4 Cardiac Arrhythmia, Bone fracture risk |
E | 2.0E‐43 | 99 |
65181 | 65, 77, 83 (6:21689596‐21689685) |
−6.18 −5.42 −4.79 |
8E‐6 | CALCR |
Calcium excretion Ossification Osteoporosis |
E | 2.6E‐42 | 98 |
SNPs assigned to protein‐coding outlier loci. ID % refers to sequence similarity with A. carolinensis reference genome. Significance level adjusted with false‐positive discovery rate at p < .007. P = p‐value of outlier. Loc = SNP location: I—Intron, E—Exon, trI—transcribed Intron (RNA reads were observed via ENSEMBL.org). Clinical relevance was obtained from OMIM and PubMed, both for animal model and human. Table references (superscript numbers): (1) Yoon et al., 2014; (2) Yang et al., 2015; (3) Myers et al., 2014; (4) Estrada et al., 2012. *Not in Interactome.