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. 2017 Aug 29;7:9802. doi: 10.1038/s41598-017-09844-4

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© The Author(s) 2017

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Heatmap. Hierarchical clustering analysis using ward clustering was used to classify samples into community state types (CSTs). There was a 90% concordance in CST classification (27/30 patients) between swab and brush sampling. Three patients with a Lactobacillus-spp. dominant vaginal microbiota on swab sampling were subsequently found to have a high-diversity CST IV on cytobrush sampling.