Table 1.
List of 36 mouse strains, sequenced by the Wellcome Trust Sanger Institute and addressed in this study
| Strain | SG | SL | MT | Total* | ||||
| Trans | Genes | Trans | Genes | Trans | Genes | Trans | Genes | |
| 129P2/OlaHsd | 227 | 179 | 139 | 125 | 2,155 | 1,298 | 2,521 | 1,602 |
| 129S1/SvImJ | 217 | 173 | 143 | 127 | 2,109 | 1,282 | 2,469 | 1,582 |
| 129S5/SvEvBrd | 202 | 159 | 132 | 116 | 2,068 | 1,246 | 2,402 | 1,521 |
| A/J | 229 | 185 | 106 | 100 | 2,036 | 1,263 | 2,371 | 1,548 |
| AKR/J | 224 | 181 | 120 | 112 | 2,052 | 1,248 | 2,396 | 1,541 |
| BALB/cJ | 205 | 158 | 120 | 108 | 1,925 | 1,199 | 2,250 | 1,465 |
| BTBR T+ Itpr3tf/J | 200 | 147 | 134 | 114 | 1,744 | 1,073 | 2,078 | 1,334 |
| BUB/BnJ | 213 | 163 | 132 | 116 | 2,233 | 1,352 | 2,578 | 1,631 |
| C3H/HeH | 185 | 144 | 115 | 104 | 1,773 | 1,082 | 2,073 | 1,330 |
| C3H/HeJ | 234 | 188 | 143 | 126 | 2,170 | 1,328 | 2,547 | 1,642 |
| C57BL/10J | 29 | 21 | 59 | 54 | 190 | 114 | 278 | 189 |
| C57BL/6NJ | 17 | 12 | 52 | 47 | 23 | 17 | 92 | 76 |
| C57BR/cdJ | 132 | 96 | 88 | 76 | 970 | 615 | 1,190 | 787 |
| C57L/J | 111 | 85 | 84 | 71 | 902 | 566 | 1,097 | 722 |
| C58/J | 121 | 99 | 100 | 90 | 1,273 | 764 | 1,494 | 953 |
| CAST/EiJ | 634 | 515 | 317 | 258 | 6,001 | 3,626 | 6,952 | 4,399 |
| CBA/J | 181 | 149 | 121 | 103 | 1,667 | 1,050 | 1,969 | 1,302 |
| DBA/1J | 230 | 180 | 133 | 119 | 2,189 | 1,335 | 2,552 | 1,634 |
| DBA/2J | 240 | 194 | 136 | 119 | 2,279 | 1,408 | 2,655 | 1,721 |
| FVB/NJ | 242 | 183 | 129 | 114 | 2,100 | 1,261 | 2,471 | 1,558 |
| I/LnJ | 267 | 206 | 135 | 122 | 2,220 | 1,384 | 2,622 | 1,712 |
| KK/HiJ | 234 | 192 | 147 | 125 | 2,128 | 1,365 | 2,509 | 1,682 |
| LEWES/EiJ | 299 | 230 | 161 | 139 | 3,112 | 1,881 | 3,572 | 2,250 |
| LP/J | 260 | 204 | 152 | 131 | 2,202 | 1,377 | 2,614 | 1,712 |
| MOLF/EiJ | 653 | 528 | 328 | 266 | 5,962 | 3,661 | 6,943 | 4,455 |
| NOD/ShiLtJ | 241 | 184 | 129 | 115 | 2,175 | 1,346 | 2,545 | 1,645 |
| NZB/BlNJ | 199 | 162 | 127 | 112 | 2,087 | 1,278 | 2,413 | 1,552 |
| NZO/HlLtJ | 217 | 176 | 129 | 112 | 2,106 | 1,316 | 2,452 | 1,604 |
| NZW/LacJ | 229 | 193 | 140 | 121 | 2,309 | 1,419 | 2,678 | 1,733 |
| PWK/PhJ | 694 | 583 | 350 | 278 | 6,273 | 3,824 | 7,317 | 4,685 |
| RF/J | 224 | 174 | 121 | 110 | 2,210 | 1,358 | 2,555 | 1,642 |
| SEA/GnJ | 224 | 177 | 126 | 115 | 2,067 | 1,303 | 2,417 | 1,595 |
| SPRET/EiJ | 1,342 | 1,055 | 556 | 459 | 10,235 | 6,107 | 12,133 | 7,621 |
| ST/bJ | 246 | 178 | 128 | 115 | 2,011 | 1,233 | 2,385 | 1,526 |
| WSB/EiJ | 326 | 257 | 170 | 144 | 3,186 | 1,951 | 3,682 | 2,352 |
| ZALENDE/EiJ | 359 | 291 | 177 | 156 | 3,457 | 2,193 | 3,993 | 2,640 |
For each strain, the number of protein-coding transcripts and genes with a SG, SL, or short indel or single amino acid sequence variation (MUT) compared with C57BL/6J, is given. Only deviant sequences with a PROVEAN score of −2.5 or less are given.
*
Transcripts and genes are given only once; that is, a transcript with a SG or a SL and a MUT will appear in the SG or SL list respectively.