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. Author manuscript; available in PMC: 2017 Aug 30.
Published in final edited form as: Neurobiol Aging. 2013 Feb 1;34(7):1717–1727. doi: 10.1016/j.neurobiolaging.2012.12.016

Table 1.

Combinations of oligonucleotides used to test the various BER activities.

Activity Substrate

8-oxo-G incision 5′-GAA CTG T(O)A GAC TGA T,
3′- GCT GAC A C T GAA CTG ACG ACT A;

Uracil incision 5′-ATA GG(U) CGG ATC AAG ATT,
3′-TAT CC (G or A) GCC GAA TAA

AP incision 5′-GAA CTG T (F) A GAC TGA T,
3′- GCT GAC A C T GAA CTG ACG ACT A

Incorporation 5′-CTG CTG ( )GT ACG GAT CGG C,
3′-GAC GTC GAC GCA GCC G.

Nick 5`-TCC GTT GAA GCC TGC TTT_GAC ATA CTA ACT TGA GCG AAA CGG-T- 3`
(Ligation) 3`- T- ACG CAA CTT CGG ACG AAA CTG TAT GAT TGA ACT CGC TTT GCC-5`

BER 5`-TCC GTT GAA GCC TGC TTT_()AC ATA CTA ACT TGA GCG AAA CGG-T- 3`
(Incorporation and Ligation) 3`- T- ACG CAA CTT CGG ACG AAA CTG TAT GAT TGA ACT CGC TTT GCC-5`

LP-BER 5`-GTC CAC CCG ACG CCA CCT CCT GCC TTC AAT GTG CTG ( ) GAT CCT ACA ACC AAG ACG AAT TCC GGA TAC GAC GGC CAG TGC CGA CCG TGC CAG CCT AAA TTT CAA TCC ACC C- 3`
3`- CAG GTG GGC TGC GGT GGA GGA CGG AAG TTA CAC GAC C CTA GGA TGT TGG TTC TGC TTA AGG CCT ATG CTG CCG GTC ACG GCT GGC ACG GTC GGA TTT AAA GTT AGG TGG G- 5`