Table 1.
Overview of the transcriptome analysis of A. officinalis roots: Summary of transcriptome sequencing and assembly results of two replicates are presented in the table.
| Control | Salt-treated | |||
|---|---|---|---|---|
| 1 | 2 | 1 | 2 | |
| Total clean reads | 64,315,388 | 48,961,920 | 62,661,642 | 48,945,928 |
| Total clean nucleotides | 5,788,384,920 | 4,406,572,800 | 5,639,547,780 | 4,405,133,520 |
| Q20 percentage | 97.98% | 98.96% | 97.99% | 98.93% |
| GC percentage | 46.86% | 46.89% | 46.66% | 46.96% |
| Total number of contigs | 158,671 | 134,122 | 143,517 | 132,908 |
| Mean length of contigs (bp) | 360 | 399 | 374 | 393 |
| Total number of unigenes (bp) | 112,094 | 107,138 | 104,707 | 105,308 |
| Mean length of unigenes (bp) | 739 | 842 | 796 | 757 |
| N50 of unigenes | 1238 | 1410 | 1336 | 1263 |
| Distinct clusters | 43,099 | 45,995 | 43,422 | 42,358 |
| Distinct singletons | 68,995 | 61,143 | 61,285 | 62,950 |
N50: 50% of the assembled bases were incorporated into sequences with length of N50 or longer.