Table 2.
DEGs related to transcription factors in the root transcriptome of A. officinalis: Transcription factors that were abundantly regulated by salt treatment are presented in the table.
| Gene ID | RPKM | log 2 fold change | p value | Homologous species | |
|---|---|---|---|---|---|
| control | treated | ||||
| ERF | |||||
| Ug35061 | 1.85 | 10.79 | +2.48 | 2.77E-56 | V. vinifera |
| Ug152478 | 1.79 | 9.75 | +2.35 | 1.33E-10 | P. trichocarpa |
| Ug49200 | 0.25 | 1.68 | +2.51 | 3.97E-06 | G. max |
| Ug42955 | 0.001 | 0.06 | +5.93 | 0.04 | B. distachyon |
| Ug65696 | 1.22 | 2.71 | +1.11 | 0.04 | V. vinifera |
| Ug102419 | 169.34 | 12.88 | −3.69 | 0.00 | C. roseus |
| Ug20505 | 73.65 | 17.74 | −2.02 | 7.99E-233 | V. vinifera |
| ARF | |||||
| Ug119295 | 0.001 | 0.05 | +5.78 | 0.04 | V. vinifera |
| Ug60441 | 0.001 | 0.08 | +6.45 | 0.01 | V. vinifera |
| Ug26596 | 0.001 | 0.88 | +9.78 | 0.04 | P. trichocarpa |
| Ug27026 | 23.66 | 0.93 | −5.01 | 6.33E-199 | V. vinifera |
| NAC | |||||
| Ug42722 | 0.06 | 1.59 | +4.69 | 3.47E-13 | M. domestica |
| Ug64865 | 2.18 | 9.28 | +2.00 | 1.01E-07 | P. trichocarpa |
| Ug152309 | 0.00 | 4.86 | +5.96 | 9.16E-09 | S. bicolor |
| Ug149916 | 0.15 | 4.34 | +4.86 | 4.35E-08 | C. variabilis |
| Ug83973 | 1.35 | 0.09 | −3.59 | 3.45E-11 | P. tomentosa |
| WRKY | |||||
| Ug36701 | 2.03 | 8.11 | +2.07 | 2.87E-09 | R. communis |
| Ug100648 | 0.46 | 2.12 | +2.16 | 4.02E-08 | V. vinifera |
| Ug8314 | 1.80 | 9.20 | +2.41 | 4.48E-21 | C. sativus |
| Ug97853 | 0.001 | 0.05 | +5.59 | 0.01 | R. communis |
| Ug132510 | 2.88 | 0.11 | −4.71 | 1.46E-07 | B. distachyon |
| Ug137386 | 1.50 | 0.00 | −4.86 | 8.14E-05 | P. tomentosa |
| bHLH | |||||
| Ug120810 | 0.02 | 0.14 | +2.48 | 0.04 | V. vinifera |
| Ug20461 | 0.001 | 0.08 | +6.29 | 0.04 | C. annuum |
| Ug144793 | 0.05 | 0.34 | +2.66 | 0.03 | V. vinifera |
| Ug39192 | 6.77 | 1.05 | −2.56 | 2.20E-08 | V. vinifera |
| Ug138470 | 6.36 | 0.54 | −3.57 | 8.68E-16 | S. lycopersicum |
| Ug138814 | 3.80 | 0.35 | −3.47 | 9.21E-06 | G. max |
| Ug71489 | 1.24 | 0.25 | −2.27 | 4.50E-05 | V. vinifera |
| Ug49859 | 49.25 | 5.28 | −3.16 | 1.22E-189 | S. lycopersicum |
| Ug102959 | 3.01 | 0.51 | −2.76 | 1.09E-05 | P. trichocarpa |
| MYB | |||||
| Ug86066 | 12.84 | 2.27 | −2.49 | 1.31E-48 | V. vinifera |
| Ug3535 | 4.40 | 0.91 | −2.08 | 3.04E-05 | S. miltiorrhiza |
| Ug155113 | 1.48 | 0.00 | −5.86 | 1.60E-08 | S. tuberosum |
| Ug121384 | 3.93 | 0.84 | −2.07 | 1.21E-15 | V. vinifera |
| Ug37122 | 3.49 | 0.43 | −2.72 | 1.53E-06 | G. max |
| Zinc finger (CCCH) | |||||
| Ug112028 | 0.03 | 0.46 | +3.96 | 0.00 | V. vinifera |
| Ug66562 | 0.26 | 1.20 | +2.18 | 1.25E-05 | V. vinifera |
| Ug131052 | 21.58 | 1.52 | −3.83 | 1.27E-98 | C. reinhardtii |
| Ug137919 | 1.62 | 0.00 | −5.04 | 2.48E-05 | V. vinifera |
| Ug135055 | 6.85 | 0.53 | −3.69 | 7.80E-44 | O. tauri |
| Ug136219 | 2.48 | 0.00 | −4.86 | 8.14E-05 | S. moellendorffii |
| GATA | |||||
| Ug154250 | 0.25 | 1.26 | +2.16 | 0.00 | V. vinifera |
| Ug137615 | 6.53 | 1.22 | −2.42 | 9.86E-15 | V. vinifera |
| Ug10919 | 11.78 | 2.22 | −2.41 | 3.81E-23 | N. tabacum |
| Ug138999 | 12.13 | 1.80 | −2.69 | 1.93E-14 | P. trichocarpa |
| GTE | |||||
| Ug149801 | 1.43 | 7.31 | +2.35 | 1.33E-10 | P. sojae |
| Ug91768 | 0.001 | 0.03 | +5.04 | 0.01 | G. max |
| Ug134172 | 3.89 | 0.21 | −4.22 | 5.51E-14 | A. anophagefferens |
| bZip | |||||
| Ug93351 | 0.00 | 0.26 | +4.85 | 0.00 | V. vinifera |
| Ug59417 | 16.27 | 3.84 | −2.06 | 1.10E-48 | V. vinifera |
| Ug131032 | 5.30 | 0.10 | −5.77 | 5.48E-28 | G. max |
| Trihelix | |||||
| Ug113286 | 15.46 | 64.55 | +2.03 | 7.33E-101 | R. communis |
| TGA | |||||
| Ug104907 | 0.14 | 0.81 | +2.86 | 5.23E-06 | V. vinifera |
| Heat stress | |||||
| Ug132833 | 6.59 | 0.16 | −5.38 | 1.37E-21 | O. sativa |
| Ug133562 | 5.30 | 0.00 | −7.06 | 5.03E-17 | B. distachyon |
| MADS-box | |||||
| Ug134705 | 5.11 | 0.39 | −3.72 | 8.31E-18 | P. infestans |
Column 1 shows the gene ID, while column 2 and 3 represent the RPKM values for control and treated samples, respectively. Log 2 fold change in expression levels are shown in column 4 while p value is given in the column 5. Column 6 indicates the species to which the assembled sequence was blasted in Nr BLAST.