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. 2017 Aug 30;10:40. doi: 10.1186/s12284-017-0181-2

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© The Author(s). 2017

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.

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Fig. 4 — Distance tree constructed using the Neighbor-Joining method based on 232 Oryza sativa, 23 Oryza rufipogon, 2 O. meriodionalis (AA genome) and 1 Oryza officinalis (outgroup) accessions.A total of 4940 SNP data points from the C6AIR was used for the analysis and the number at the nodes indicate boot- strap value (100 replicates). The colors in the tree correspond to species and subpopulations; Oryza officinalis indicated in light green; O. meriodionalis in dark green; Oryza rufipogon in black, and the five subpopulations of Oryza sativa are in orange (aus), red (indica), purple (aromatic or Group V), cyan (tropical japonica) and blue (temperate japonica)