| APBS | Adaptive Poisson–Boltzmann Solver |
| BLAST | Basic Local Alignment Search Tools |
| CLN | Colchicine |
| GDP | Guanosine Diphosphate |
| GTP | Guanosine Triphosphate |
| MD | Molecular Dynamics |
| MM/PBSA | Molecular Mechanics Poisson–Boltzmann Surface Area |
| MM/GBSA | Molecular Mechanics Generalized-Born Surface Area |
| MT | Microtubule |
| RMSD | Root-Mean-Square Deviation |
| SASA | Solvent Accessible Surface Area |