. 2017 Aug 11;18(8):1755. doi: 10.3390/ijms18081755

Table 2.

List of differentially abundant proteins in M. baccata leaves under different treatments.

Accession No. ^a	Protein Name	Plant Species ^b	Coverage (%) ^c	Peptides (95%) ^d	iTRAQ Ratio	Expression Pattern ^e
20 °C vs 5 °C
gi\|462406120	hypothetical protein PRUPE_ppa001062mg	Prunus persica	40.28	53	1.47	↑
gi\|462409482	hypothetical protein PRUPE_ppa002222mg	Prunus persica	45.78	47	1.58	↑
gi\|462403952	hypothetical protein PRUPE_ppa003093mg	Prunus persica	48.76	38	1.54	↑
gi\|462415344	hypothetical protein PRUPE_ppa000130mg	Prunus persica	19.75	33	0.74	↓
gi\|462400695	hypothetical protein PRUPE_ppa004306mg	Prunus persica	50.10	43	1.32	↑
gi\|392055980	plasma membrane H⁺-ATPase	Malus baccata var. xiaojinensis	27.88	22	0.40	↓
gi\|462419972	hypothetical protein PRUPE_ppa005369mg	Prunus persica	53.23	29	1.63	↑
gi\|428697281	photosystem II CP43 chlorophyll apoprotein	Fragaria virginiana	34.88	39	0.59	↓
gi\|462411072	hypothetical protein PRUPE_ppa000855mg	Prunus persica	29.05	26	2.09	↑
gi\|462403979	hypothetical protein PRUPE_ppa002220mg	Prunus persica	28.76	22	0.36	↓
gi\|462418213	hypothetical protein PRUPE_ppa000841mg	Prunus persica	15.04	14	0.69	↓
gi\|6136112	UTP—glucose-1-phosphate uridylyltransferase;	Pyrus pyrifolia	37.79	14	1.66	↑
gi\|462395206	hypothetical protein PRUPE_ppa004819mg	Prunus persica	36.73	15	1.64	↑
gi\|568246711	photosystem II protein D1	Pyrus spinosa	40.23	21	0.53	↓
gi\|462407840	hypothetical protein PRUPE_ppa010884mg	Prunus persica	40.95	28	3.50	↑
gi\|568246731	photosystem I P700 apoprotein A1	Pyrus spinosa	16.40	14	0.39	↓
gi\|110083901	dehydroascorbate reductase	Malus domestica	53.99	14	2.13	↑
gi\|2981475	putative cinnamyl alcohol dehydrogenase	Malus domestica	34.46	11	1.41	↑
gi\|462404058	hypothetical protein PRUPE_ppa000235mg	Prunus persica	7.75	10	0.54	↓
gi\|462401406	hypothetical protein PRUPE_ppa010331mg	Prunus persica	43.87	18	0.52	↓
gi\|462402851	hypothetical protein PRUPE_ppa002111mg	Prunus persica	23.22	13	2.33	↑
gi\|462419292	hypothetical protein PRUPE_ppa009763mg	Prunus persica	27.24	13	0.47	↓
gi\|568246730	photosystem I P700 apoprotein A2	Pyrus spinosa	18.53	15	0.42	↓
gi\|302399085	TCP domain class transcription factor	Malus domestica	16.67	7	0.31	↓
gi\|462419362	hypothetical protein PRUPE_ppa004904mg	Prunus persica	18.52	7	0.49	↓
gi\|462408065	hypothetical protein PRUPE_ppa012896mg	Prunus persica	47.33	10	1.71	↑
gi\|118136427	vacuolar H⁺-PPase	Malus domestica	6.85	4	0.33	↓
gi\|357528260	granule-bound starch synthase GBSS1	Malus domestica	28.34	19	3.02	↑
gi\|470135580	PREDICTED: 60S ribosomal protein L3-like	Fragaria vesca subsp. vesca	13.11	6	0.10	↓
gi\|470137537	PREDICTED: coproporphyrinogen-III oxidase, chloroplastic-like	Fragaria vesca subsp. vesca	9.07	3	0.69	↓
gi\|462419678	hypothetical protein PRUPE_ppa004988mg	Prunus persica	7.05	3	0.19	↓
gi\|421953224	BIS1 biphenyl synthase	Malus domestica	11.79	5	0.12	↓
gi\|377829931	rps7 gene product (chloroplast)	Pentactina rupicola	23.23	5	6.31	↑
gi\|462400922	hypothetical protein PRUPE_ppa006524mg	Prunus persica	7.84	3	0.19	↓
gi\|462415015	hypothetical protein PRUPE_ppa012878mg	Prunus persica	20.53	3	0.21	↓
gi\|462422777	hypothetical protein PRUPE_ppa011659mg	Prunus persica	12.38	2	0.67	↓
gi\|470101387	PREDICTED: 60S ribosomal protein L5-like	Fragaria vesca subsp. vesca	7.69	2	0.32	↓
gi\|462406042	hypothetical protein PRUPE_ppa002386mg	Prunus persica	3.10	2	8.17	↑
gi\|462407732	hypothetical protein PRUPE_ppa010094mg	Prunus persica	15.53	5	0.17	↓
gi\|470127406	PREDICTED: 40S ribosomal protein S6-like	Fragaria vesca subsp. vesca	9.64	2	0.09	↓
gi\|462418868	hypothetical protein PRUPE_ppa000009mg	Prunus persica	0.28	1	0.28	↓
0 °C vs 20 °C
gi\|462416702	hypothetical protein PRUPE_ppa001865mg	Prunus persica	52.93	68	0.48	↓
gi\|462396213	hypothetical protein PRUPE_ppa025698mg	Prunus persica	34.58	31	0.65	↓
gi\|462400695	hypothetical protein PRUPE_ppa004306mg	Prunus persica	50.10	43	0.73	↓
gi\|568246744	cytochrome f	Pyrus spinosa	62.81	31	0.59	↓
gi\|428697281	photosystem II CP43 chlorophyll apoprotein (chloroplast)	Fragaria virginiana	34.88	39	0.56	↓
gi\|470128485	PREDICTED: phosphoribulokinase, chloroplastic-like	Fragaria vesca subsp. vesca	51.96	37	0.39	↓
gi\|568246756	photosystem II CP47 chlorophyll apoprotein	Pyrus spinosa	29.72	32	0.65	↓
gi\|462407840	hypothetical protein PRUPE_ppa010884mg	Prunus persica	40.95	28	0.45	↓
gi\|381393060	glyceraldehyde-3-phosphate dehydrogenase A	Pyrus × bretschneideri	51.12	58	0.28	↓
gi\|6177796	JPR ORF1	Pyrus pyrifolia	18.16	10	0.48	↓
gi\|302399085	TCP domain class transcription factor	Malus domestica	16.67	7	3.13	↑
gi\|470135580	PREDICTED: 60S ribosomal protein L3-like	Fragaria vesca subsp. vesca	13.11	6	4.79	↑
gi\|462400607	hypothetical protein PRUPE_ppa002173mg	Prunus persica	9.49	6	0.58	↓
gi\|421953224	BIS1 biphenyl synthase	Malus domestica	11.79	5	3.47	↑
gi\|462400922	hypothetical protein PRUPE_ppa006524mg	Prunus persica	7.84	3	2.96	↑
gi\|470101387	PREDICTED: 60S ribosomal protein L5-like	Fragaria vesca subsp. vesca	7.69	2	1.80	↑
gi\|462405695	hypothetical protein PRUPE_ppa004869mg	Prunus persica	3.89	2	1.69	↑
gi\|470103122	probable cadmium/zinc-transporting ATPase HMA1, chloroplastic-like	Fragaria vesca subsp. vesca	1.72	2	7.11	↑
0 °C vs 5 °C
gi\|462415344	hypothetical protein PRUPE_ppa000130mg	Prunus persica	19.75	33	0.58	↓
gi\|568246744	cytochrome f	Pyrus spinosa	62.81	31	0.55	↓
gi\|4165550	apgm	Malus domestica	47.76	27	1.43	↑
gi\|428697281	photosystem II CP43 chlorophyll apoprotein (chloroplast)	Fragaria virginiana	34.88	39	0.33	↓
gi\|462411072	hypothetical protein PRUPE_ppa000855mg	Prunus persica	29.05	26	2.11	↑
gi\|462403979	hypothetical protein PRUPE_ppa002220mg	Prunus persica	28.76	22	0.52	↓
gi\|470128485	PREDICTED: phosphoribulokinase, chloroplastic-like	Fragaria vesca subsp. vesca	51.96	37	0.54	↓
gi\|462408129	hypothetical protein PRUPE_ppa006653mg	Prunus persica	59.35	30	0.59	↓
gi\|568246756	photosystem II CP47 chlorophyll apoprotein	Pyrus spinosa	29.72	32	0.54	↓
gi\|568246711	photosystem II protein D1	Pyrus spinosa	40.23	21	0.35	↓
gi\|568246731	photosystem I P700 apoprotein A1	Pyrus spinosa	16.40	14	0.23	↓
gi\|110083901	dehydroascorbate reductase	Malus domestica	53.99	14	2.09	↑
gi\|381393060	glyceraldehyde-3-phosphate dehydrogenase A	Pyrus × bretschneideri	51.12	58	0.34	↓
gi\|2981475	putative cinnamyl alcohol dehydrogenase	Malus domestica	34.46	11	1.32	↑
gi\|462402866	hypothetical protein PRUPE_ppa000990mg	Prunus persica	12.03	11	0.43	↓
gi\|462419292	hypothetical protein PRUPE_ppa009763mg	Prunus persica	27.24	13	0.48	↓
gi\|568246730	photosystem I P700 apoprotein A2	Pyrus spinosa	18.53	15	0.41	↓
gi\|462395764	hypothetical protein PRUPE_ppa008222mg	Prunus persica	35.88	12	0.69	↓
gi\|568246726	photosystem II protein D2	Pyrus spinosa	24.93	23	0.22	↓
gi\|313600351	beta-1,3-glucanase	Malus hupehensis	24.28	11	2.00	↑
gi\|462422251	hypothetical protein PRUPE_ppa001168mg	Prunus persica	8.54	7	1.91	↑
gi\|118136427	vacuolar H⁺-PPase	Malus domestica	6.85	4	0.52	↓
gi\|462405098	hypothetical protein PRUPE_ppa008755mg	Prunus persica	14.69	8	0.41	↓
gi\|470135580	PREDICTED: 60S ribosomal protein L3-like	Fragaria vesca subsp. vesca	13.11	6	0.49	↓
gi\|470135491	PREDICTED: signal recognition particle 54 kDa protein, chloroplastic-like	Fragaria vesca subsp. vesca	11.78	6	2.91	↑
gi\|470137537	PREDICTED: coproporphyrinogen-III oxidase, chloroplastic-like	Fragaria vesca subsp. vesca	9.07	3	0.64	↓
gi\|462419678	hypothetical protein PRUPE_ppa004988mg	Prunus persica	7.05	3	0.42	↓
gi\|421953224	BIS1 biphenyl synthase	Malus domestica	11.79	5	0.46	↓
gi\|470101387	PREDICTED: 60S ribosomal protein L5-like	Fragaria vesca subsp. vesca	7.69	2	0.58	↓
gi\|462406042	hypothetical protein PRUPE_ppa002386mg	Prunus persica	3.10	2	3.05	↑
gi\|462407696	hypothetical protein PRUPE_ppa004527mg	Prunus persica	5.54	2	7.80	↑
gi\|462405695	hypothetical protein PRUPE_ppa004869mg	Prunus persica	3.89	2	2.07	↑
gi\|470127406	PREDICTED: 40S ribosomal protein S6-like	Fragaria vesca subsp. vesca	9.64	2	0.15	↓
gi\|462424295	hypothetical protein PRUPE_ppa000786mg	Prunus persica	1.79	2	0.60	↓
20 °C + Ca vs 20 °C
gi\|462403952	hypothetical protein PRUPE_ppa003093mg	Prunus persica	48.76	38	0.51	↓
gi\|462403979	hypothetical protein PRUPE_ppa002220mg	Prunus persica	28.76	22	0.41	↓
gi\|2981475	putative cinnamyl alcohol dehydrogenase	Malus domestica	34.46	11	0.66	↓
gi\|462402851	hypothetical protein PRUPE_ppa002111mg	Prunus persica	23.22	13	0.41	↓
gi\|313600351	beta-1,3-glucanase	Malus hupehensis	24.28	11	0.39	↓
gi\|114795078	glutathione S-transferase	Pyrus communis	24.51	5	0.60	↓
gi\|421953224	BIS1 biphenyl synthase	Malus domestica	11.79	5	2.47	↑
gi\|470129084	PREDICTED: GTP-binding protein SAR1A-like	Fragaria vesca subsp. vesca	11.40	3	1.79	↑
gi\|470103122	probable cadmium/zinc-transporting ATPase HMA1, chloroplastic-like	Fragaria vesca subsp. vesca	1.72	2	8.09	↑
0 °C + Ca vs 0 °C
gi\|462403979	hypothetical protein PRUPE_ppa002220mg	Prunus persica	28.76	22	0.10	↓
gi\|462418975	hypothetical protein PRUPE_ppa003053mg	Prunus persica	32.07	20	1.61	↑
gi\|462405014	hypothetical protein PRUPE_ppa007588mg	Prunus persica	33.15	13	1.64	↑
gi\|462402866	hypothetical protein PRUPE_ppa000990mg	Prunus persica	12.03	11	2.36	↑
gi\|313600351	beta-1,3-glucanase	Malus hupehensis	24.28	11	0.39	↓
gi\|462422598	hypothetical protein PRUPE_ppa001487mg	Prunus persica	16.32	12	0.56	↓
gi\|462405098	hypothetical protein PRUPE_ppa008755mg	Prunus persica	14.69	8	2.38	↑
gi\|357528260	granule-bound starch synthase GBSS1	Malus domestica	28.34	19	1.96	↑
gi\|470135580	PREDICTED: 60S ribosomal protein L3-like	Fragaria vesca subsp. vesca	13.11	6	0.14	↓
gi\|462409757	hypothetical protein PRUPE_ppa003798mg	Prunus persica	7.30	5	5.11	↑
gi\|46093878	sucrose phosphate phosphatase	Malus domestica	13.18	5	0.76	↓
gi\|462401293	hypothetical protein PRUPE_ppa009351mg	Prunus persica	19.59	5	0.21	↓
gi\|470137537	PREDICTED: coproporphyrinogen-III oxidase, chloroplastic-like	Fragaria vesca subsp. vesca	9.07	3	1.41	↑
gi\|470125921	PREDICTED: pantothenate kinase 2-like	Fragaria vesca subsp. vesca	6.72	6	1.38	↑
gi\|470127406	PREDICTED: 40S ribosomal protein S6-like	Fragaria vesca subsp. vesca	9.64	2	0.75	↓

^a The protein ID from National Center for Biotechnology Information (NCBI); ^b The plant species that matched the peptides. Accession number was recorded as a reference for the identification in NCBI_Rosaceae database, and the species origin annotation of all matching proteins were belonging to the Rosaceae; ^c The amino acid sequence coverage for the identified proteins; ^d The number of distinct peptide sequences in the protein group; ^e ↑ upregulated, ↓ downregulated.