Table 1.
MAPK cascade proteins identified in the Fragaria vesca genome.
| Gene Name | Gene ID | Chr | Location | ORF (aa) | mW (kDa) | pI | Instability Index | Ai | GRAVY | Number of Exons |
|---|---|---|---|---|---|---|---|---|---|---|
| MAPKs | ||||||||||
| MAPK1 | 101290762 | 5 | 1784699..1788845 | 377 | 43.24 | 6.4 | 46.14 | 90.53 | −0.37 | 6 |
| MAPK2 | 101294541 | 3 | 11156420..11160717 | 609 | 69.37 | 9.26 | 32.32 | 83.92 | −0.44 | 10 |
| MAPK3 | 101295052 | 5 | 10188960..10193438 | 691 | 78.45 | 7.86 | 44.65 | 75.96 | −0.64 | 11 |
| MAPK4 | 101295411 | 4 | 13067191..13073043 | 561 | 63.82 | 8.73 | 36.24 | 77.4 | −0.48 | 10 |
| MAPK5 | 101297368 | 1 | 1081422..1084925 | 391 | 44.71 | 5.65 | 39.58 | 89.82 | −0.28 | 5 |
| MAPK6 | 101300335 | 4 | 18603202..18607991 | 580 | 66.33 | 7.07 | 38.18 | 80.53 | −0.55 | 12 |
| MAPK7 | 101306152 | 6 | 26819611..26825467 | 618 | 70.68 | 9.23 | 37.11 | 81.12 | −0.47 | 10 |
| MAPK8 | 101306313 | 3 | 19690549..19693371 | 371 | 42.71 | 5.62 | 39.46 | 93.32 | −0.26 | 6 |
| MAPK9 | 101308652 | 3 | 19870360..19873988 | 365 | 41.85 | 5.05 | 42.04 | 95.34 | −0.28 | 6 |
| MAPK10 | 101313449 | 7 | 4574723..4578939 | 373 | 42.67 | 6.08 | 43.9 | 89.38 | −0.33 | 6 |
| MAPK11 | 101313547 | 1 | 9041132..9043978 | 370 | 42.64 | 8.32 | 33.43 | 94.32 | −0.24 | 3 |
| MAPK12 | 101314433 | 2 | 32254545..32257169 | 372 | 42.64 | 6.09 | 38.46 | 95.13 | −0.25 | 3 |
| MAPKKs | ||||||||||
| MAPKK1 | 101296494 | 5 | 21018101..21019144 | 347 | 38.73 | 5.64 | 58.27 | 86.54 | −0.19 | 1 |
| MAPKK2 | 101298915 | 6 | 26457958..26460120 | 365 | 40.37 | 9.28 | 60.36 | 76.68 | −0.44 | 1 |
| MAPKK3 | 101299988 | 1 | 5116387..5119659 | 355 | 39.86 | 6.14 | 51.1 | 95.75 | −0.18 | 8 |
| MAPKK4 | 101300536 | 5 | 9858540..9860210 | 325 | 36.28 | 8.01 | 58.45 | 82.52 | −0.26 | 1 |
| MAPKK5 | 101302771 | 6 | 37368876..37372756 | 518 | 57.53 | 5.34 | 45.36 | 89.63 | −0.15 | 9 |
| MAPKK6 | 101309937 | 5 | 1450708..1451997 | 244 | 26.72 | 6.44 | 56.61 | 80.29 | −0.31 | 1 |
| MAPKK7 | 101310227 | 5 | 1459329..1461416 | 350 | 38.86 | 6.01 | 67.41 | 76.06 | −0.35 | 1 |
| MAPKKKs | ||||||||||
| MAPKKK1 | 101291312 | 2 | 32932997..32939667 | 714 | 78.16 | 9.58 | 56.43 | 66.79 | −0.55 | 10 |
| MAPKKK2 | 101291614 | 3 | 13958286..13959565 | 311 | 34.68 | 5.59 | 39.15 | 79.9 | −0.31 | 1 |
| MAPKKK3 | 101291671 | 1 | 4101379..4109515 | 973 | 108.54 | 7.03 | 45.49 | 81.31 | −0.42 | 15 |
| MAPKKK4 | 101291740 | 6 | 36971098..36974966 | 384 | 42.80 | 6.76 | 36.76 | 75.62 | −0.49 | 6 |
| MAPKKK5 | 101292378 | 2 | 18357934..18361624 | 278 | 31.77 | 9.66 | 43.47 | 96.12 | −0.04 | 8 |
| MAPKKK6 | 101292778 | 3 | 8405027..8408729 | 539 | 61.14 | 9.57 | 50.83 | 76.36 | −0.57 | 4 |
| MAPKKK7 | 101292844 | 1 | 4173320..4175043 | 265 | 29.70 | 5.77 | 46.62 | 83.47 | −0.40 | 1 |
| MAPKKK8 | 101293476 | 4 | 7105385..7111294 | 390 | 43.69 | 6.48 | 32.42 | 79.23 | −0.44 | 7 |
| MAPKKK9 | 101294141 | 2 | 2588978..2594536 | 1126 | 125.14 | 5.80 | 51.66 | 74.17 | −0.58 | 9 |
| MAPKKK10 | 101294311 | 7 | 2095625..2102937 | 1221 | 135.58 | 5.47 | 47.97 | 72.09 | −0.61 | 9 |
| MAPKKK11 | 101294663 | 5 | 16790800..16799279 | 511 | 55.61 | 8.61 | 52.95 | 79.77 | −0.45 | 8 |
| MAPKKK12 | 101294665 | 5 | 24653764..24659548 | 591 | 65.24 | 5.68 | 54.8 | 70.93 | −0.59 | 9 |
| MAPKKK13 | 101294687 | 6 | 25086652..25087498 | 214 | 24.04 | 6.34 | 49.53 | 82.9 | −0.47 | 2 |
| MAPKKK14 | 101295466 | 7 | 2167754..2172789 | 690 | 76.10 | 6.23 | 37.12 | 84.51 | −0.24 | 15 |
| MAPKKK15 | 101295905 | 3 | 26006132..26009750 | 415 | 46.98 | 7.91 | 40.22 | 86.7 | −0.43 | 12 |
| MAPKKK16 | 101296046 | 7 | 2179758..2185318 | 678 | 75.20 | 5.52 | 39.59 | 87.45 | −0.22 | 15 |
| MAPKKK17 | 101296626 | 2 | 17778744..17784528 | 570 | 63.92 | 5.88 | 55.83 | 84.63 | −0.49 | 16 |
| MAPKKK18 | 101297008 | 1 | 11236088..11240295 | 625 | 68.99 | 9.27 | 67.35 | 68.82 | −0.54 | 11 |
| MAPKKK19 | 101297162 | 6 | 5243004..5248949 | 670 | 74.51 | 5.97 | 57.02 | 71.43 | −0.53 | 17 |
| MAPKKK20 | 101298508 | 4 | 17684149..17687733 | 434 | 49.07 | 7.79 | 36.92 | 84.06 | −0.48 | 11 |
| MAPKKK21 | 101298797 | 5 | 2958127..2962070 | 404 | 44.58 | 7.51 | 37.14 | 80.37 | −0.39 | 6 |
| MAPKKK22 | 101298822 | 6 | 35785690..35790732 | 457 | 51.78 | 6.10 | 44.73 | 84.07 | −0.46 | 13 |
| MAPKKK23 | 101299949 | 4 | 8553004..8558770 | 1092 | 121.56 | 5.55 | 43.15 | 72.31 | −0.59 | 9 |
| MAPKKK24 | 101299957 | 5 | 2999007..3002862 | 347 | 39.54 | 8.04 | 52.15 | 82.65 | −0.33 | 3 |
| MAPKKK25 | 101300060 | 5 | 1036941..1041266 | 697 | 78.06 | 6.49 | 44.46 | 77.91 | −0.58 | 14 |
| MAPKKK26 | 101300175 | 1 | 1133811..1138366 | 475 | 53.79 | 9.10 | 44.71 | 86.82 | −0.45 | 13 |
| MAPKKK27 | 101300188 | 7 | 404217..406592 | 344 | 37.94 | 5.76 | 36.34 | 88.46 | −0.07 | 1 |
| MAPKKK28 | 101300232 | 3 | 626166..628364 | 407 | 44.97 | 4.89 | 47.56 | 75.92 | −0.30 | 1 |
| MAPKKK29 | 101300748 | 6 | 105416..107101 | 426 | 47.79 | 8.88 | 45.4 | 80.61 | −0.45 | 1 |
| MAPKKK30 | 101302206 | 1 | 3358613..3363681 | 995 | 109.61 | 8.87 | 43.56 | 77.84 | −0.47 | 8 |
| MAPKKK31 | 101302247 | 3 | 26940964..26947028 | 717 | 79.93 | 5.70 | 43.53 | 77.98 | −0.33 | 10 |
| MAPKKK32 | 101302307 | 1 | 10029166..10031248 | 415 | 45.28 | 5.03 | 46.91 | 84.36 | −0.14 | 1 |
| MAPKKK33 | 101302624 | 3 | 4232964..4238052 | 458 | 51.96 | 7.59 | 49.66 | 90.72 | −0.41 | 12 |
| MAPKKK34 | 101302797 | 7 | 19633448..19634707 | 325 | 36.69 | 8.72 | 39.02 | 80.98 | −0.36 | 1 |
| MAPKKK35 | 101303378 | 7 | 19639527..19640520 | 322 | 36.61 | 8.80 | 40.45 | 87.17 | −0.42 | 1 |
| MAPKKK36 | 101303395 | 2 | 22992935..22998826 | 555 | 61.75 | 6.30 | 47.28 | 86.74 | −0.36 | 16 |
| MAPKKK37 | 101303762 | 2 | 14719795..14732427 | 554 | 62.13 | 5.37 | 42.28 | 87.27 | −0.39 | 16 |
| MAPKKK38 | 101303943 | 7 | 620946..625977 | 343 | 37.74 | 6.05 | 38.37 | 87.03 | −0.10 | 3 |
| MAPKKK39 | 101304212 | 6 | 25909877..25910863 | 328 | 36.85 | 8.61 | 42.91 | 89.45 | −0.25 | 1 |
| MAPKKK40 | 101304439 | 2 | 16018344..16021537 | 400 | 44.29 | 7.53 | 30.1 | 75.07 | −0.42 | 6 |
| MAPKKK41 | 101305170 | 6 | 21759476..21761269 | 309 | 34.91 | 4.67 | 38.89 | 94.4 | −0.13 | 4 |
| MAPKKK42 | 101305413 | 7 | 5759511..5762791 | 444 | 49.43 | 6.92 | 55.58 | 82.79 | −0.26 | 10 |
| MAPKKK43 | 101305446 | 3 | 25233157..25239380 | 777 | 86.22 | 6.83 | 50.65 | 68.51 | −0.66 | 13 |
| MAPKKK44 | 101305461 | 4 | 12404607..12409591 | 677 | 74.37 | 7.24 | 47.43 | 74.93 | −0.44 | 17 |
| MAPKKK45 | 101305547 | 3 | 15016023..15017869 | 447 | 49.64 | 4.50 | 50.48 | 80.02 | −0.19 | 1 |
| MAPKKK46 | 101305739 | 3 | 5762142..5770103 | 1323 | 145.89 | 5.11 | 46.54 | 75.92 | −0.56 | 9 |
| MAPKKK47 | 101305774 | 6 | 13132618..13140647 | 845 | 93.61 | 5.77 | 44.72 | 81.34 | −0.37 | 16 |
| MAPKKK48 | 101305797 | 1 | 2243252..2248966 | 1403 | 152.80 | 5.25 | 47.01 | 73.02 | −0.52 | 10 |
| MAPKKK49 | 101307123 | 5 | 17495323..17497199 | 405 | 45.08 | 5.36 | 55.35 | 76.07 | −0.16 | 2 |
| MAPKKK50 | 101307418 | 6 | 37601874..37604741 | 346 | 38.84 | 7.21 | 42.97 | 84.91 | −0.24 | 6 |
| MAPKKK51 | 101307975 | 3 | 13141362..13142841 | 488 | 53.77 | 4.85 | 49.32 | 79.04 | −0.15 | 1 |
| MAPKKK52 | 101308436 | 2 | 20472173..20477216 | 927 | 101.52 | 5.36 | 43.52 | 83.95 | −0.32 | 13 |
| MAPKKK53 | 101308592 | 6 | 15883396..15899615 | 765 | 85.91 | 5.77 | 51.23 | 80.58 | −0.41 | 18 |
| MAPKKK54 | 101308868 | 5 | 1573420..1580407 | 902 | 98.41 | 9.44 | 60.15 | 64.01 | −0.60 | 12 |
| MAPKKK55 | 101309867 | 1 | 8084450..8090390 | 572 | 64.91 | 5.69 | 49.85 | 83.5 | −0.43 | 16 |
| MAPKKK56 | 101309911 | 3 | 949163..951911 | 374 | 42.66 | 8.96 | 46.65 | 81.1 | −0.42 | 3 |
| MAPKKK57 | 101310026 | 5 | 10174217..10182364 | 1034 | 112.94 | 5.53 | 48.91 | 81.21 | −0.44 | 13 |
| MAPKKK58 | 101310764 | 7 | 22365118..22371514 | 903 | 97.23 | 9.71 | 65.72 | 62.98 | −0.59 | 12 |
| MAPKKK59 | 101312454 | 5 | 26796369..26801049 | 390 | 44.24 | 5.57 | 43.6 | 83.49 | −0.40 | 6 |
| MAPKKK60 | 101312659 | 6 | 20974416..20976740 | 433 | 49.51 | 5.10 | 37.22 | 83.79 | −0.48 | 5 |
| MAPKKK61 | 101312816 | 3 | 25255805..25265535 | 794 | 89.06 | 6.09 | 50.14 | 76.49 | −0.45 | 17 |
| MAPKKK62 | 101312898 | 2 | 9859412..9866665 | 1192 | 130.83 | 5.15 | 48.2 | 80.05 | −0.44 | 9 |
| MAPKKK63 | 101313105 | 3 | 25269938..25276589 | 710 | 80.27 | 7.32 | 41.81 | 78.39 | −0.48 | 13 |
| MAPKKK64 | 101313212 | 5 | 5764644..5768035 | 350 | 39.78 | 6.43 | 46.69 | 83.09 | −0.30 | 7 |
| MAPKKK65 | 101313251 | 1 | 16064274..16069495 | 618 | 67.06 | 9.22 | 52.62 | 67.38 | −0.53 | 11 |
| MAPKKK66 | 101313299 | 3 | 26914066..26919397 | 239 | 27.17 | 9.23 | 30.57 | 96.69 | −0.21 | 11 |
| MAPKKK67 | 101315161 | 6 | 6707178..6711235 | 358 | 40.09 | 9.03 | 39.93 | 88.02 | −0.30 | 6 |
| MAPKKK68 | 101315443 | 6 | 93407..100195 | 918 | 100.48 | 5.91 | 44.43 | 77.24 | −0.45 | 13 |
| MAPKKK69 | 105349270 | 7 | 5764174..5768902 | 438 | 47.17 | 10.09 | 59.37 | 77.92 | −0.48 | 10 |
| MAPKKK70 | 105349796 | 2 | 18355556..18356787 | 219 | 24.73 | 8.73 | 42.83 | 89.45 | −0.21 | 4 |
| MAPKKK71 | 105351460 | 1 | 10823118..10824804 | 351 | 39.06 | 4.97 | 47.76 | 73.59 | −0.36 | 1 |
| MAPKKK72 | 105351574 | 5 | 13162396..13164156 | 298 | 33.63 | 6.84 | 50.69 | 82.08 | −0.43 | 1 |
| MAPKKK73 | 105353223 | 7 | 5144013..5149034 | 682 | 77.82 | 8.15 | 44.6 | 87.76 | −0.40 | 13 |
| MAPKKKKs | ||||||||||
| MAP4K1 | 101308962 | 4 | 17222313..17230075 | 821 | 90.20 | 5.21 | 47.82 | 71.06 | −0.54 | 18 |