Table 1. Summary of the relationship of cytosine deamination rate with incubation temperature and incubation time with the bisulphite–hydroquinone solution.
Temperature (°C) |
1 h |
n |
4 h |
n |
18 h |
n |
0 | 98.00 | 1 (10) | 78.30 ± 25.03 | 2 (20) | 82.80 | 1 (11) |
15 | 88.60 ± 3.68 | 2 (24) | 98.35 ± 0.49 | 2 (22) | 54.25 ± 11.24 | 2 (18) |
35 | 30.05 ± 0.07 | 2 (19) | 69.75 ± 1.34 | 2 (21) | 94.10 ± 5.09 | 2 (21) |
55 | 77.30 ± 2.40 | 2 (23) | 99.48 ± 0.39 | 4 (41) | 99.65 ± 0.52 | 4 (45) |
80 | 92.69 ± 9.22 | 2 (23) | – | – | – | – |
85 | 94.65 ± 0.49 | 2 (24) | 93.20 ± 9.62 | 2 (19) | 93.40 ± 0.32 | 2 (24) |
95 | 98.05 ± 2.20 | 5 (53) | – | – | – | – |
The ratio of deaminated cytosine is given as a percentage of total cytosine content in between the primer binding sites of the upper strand of ARTα. n indicates the number of independent experiments that yielded a PCR product. The total number of sequenced clones is given in parentheses.