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. 2017 Jul 20;18(9):1660–1670. doi: 10.15252/embr.201744070

Table 1.

Abundance of the Thermococcus kodakaraensis KOD1 archaellar and chemotaxis proteins

Accessiona Gene Protein annotation Sizea % Ab % B Average, %
TK0038 flaB1 Archaeal flagellin B1 precursor 294 0.40 0.43 0.41
TK0039 flaB2 Archaeal flagellin B2 precursor 580 0.26 0.27 0.27
TK0040 flaB3 Archaeal flagellin B3 precursor 258 0.24 0.24 0.24
TK0041 flaB4 Archaeal flagellin B4 precursor 218 nd 0.05 0.03
TK0042 flaB5 Archaeal flagellin B5 precursor 274 0.05 0.05 0.05
TK0043 flaC Archaeal flagella‐related protein C 158 0.03 0.03 0.03
TK0044 flaD Archaeal flagella‐related protein D 474 0.11 0.11 0.11
TK0045 flaF Archaeal flagella‐related protein F 174 nd nd
TK0046 flaG Archaeal flagella‐related protein G 161 nd nd
TK0047 flaH Archaeal flagella‐related protein H 232 nd 0.06 0.03
TK0048 flaI Archaeal flagella‐related protein I 540 0.02 0.02 0.02
TK0049 flaJ Archaeal flagella‐related protein J 579 nd nd nd
TK0050 hyp Hypothetical protein 664 0.01 nd nd
TK0629 cheW Chemotaxis signal transduction 145 0.12 0.11 0.12
TK0630 mcp1 Methyl‐accepting chemotaxis 438 0.11 0.12 0.11
TK0631 cheR Chemotaxis methyltransferase 279 nd nd nd
TK0632 cheY Chemotaxis response regulator 120 0.06 0.05 0.06
TK0633 cheB Chemotaxis methylesterase 355 0.02 0.02 0.02
TK0634n cheA Chemotaxis histidine kinase 548 nd nd
TK0636 cheC Chemotaxis inhibitor protein 207 nd nd
TK0637 cheC Chemotaxis protein cheC 207 nd nd
TK0638 mcp2 Methyl‐accepting chemotaxis 747 0.02 0.02 0.02
TK0639 cheD Chemotaxis protein cheD 161 nd nd
TK0640 hyp Hypothetical protein 251 nd nd
TK0641 cheF Hypothetical protein 341 nd nd
TK0156 mcp3 Methyl‐accepting chemotaxis 742 0.05 0.05 0.05
TK1606 mcp4 Methyl‐accepting chemotaxis 251 0.02 0.01 0.02
TK2147 mcp5 Methyl‐accepting chemotaxis 769 0.01 0.02 0.02

nd, not detected.

a

Accession numbers, gene names, annotations, and protein size in number of amino acids are from the IMG‐JGI database (Materials and Methods).

b

Protein values are expressed as percent of total cell protein detected for replicates A and B in addition to the average value.

Source data are available online for this table.