Table 2.

Main assembly, SNP, and annotation statistics.

	Assembly statistics							Mutations							Annotation statistics
	#Read pairs	Avg. cov	Contigs no.	N50	% Reads mapping	GC %	Tot. length	COMPa	DELb		INSc	MNPd	SNPe	Total	genes	CDSf	tRNA	rRNA
Min	299841	21.4	63	45004	95.4	66.0	4340930	3925	132	141		792	18534	23524	3972	3864	70	6
Avg	477042	34.1	105	93888	97.1	66.4	4662510	15193	338	311		2687	57867	76396	4330	4217	74	6
Median	463220	33.1	100	94682	97.1	66.4	4735262	7028	261	250		1348	38944	47777	4403	4290	74	6
Max	759185	54.2	181	143022	98.2	66.8	5214241	42115	753	609		7110	115498	166085	4881	4755	82	11

Data for each isolate is reported in Supplementary Table 1.

^aComplex mutations (for instance rearrangements).

^bDeletions (with respect to S. maltophilia K279a reference strain).

^cInsertions.

^dMultiple Nucleotide Polymorphisms.

^eSingle Nucleotide Polymorphisms.

^fCoding Sequences.