Table 2.
Identified representative miRNAs and their expression patterns in H. syriacus
| ID | Sequence | Flower* | Leaf* | Root* | Ovary* |
|---|---|---|---|---|---|
| hsy-miR156a-g-5p | UUGACAGAAGAUAGAGAGCAC | 3437.3 | 144491.9 | 160330.7 | 21097.3 |
| hsy-miR159a-f-3p | UUUGGAUUGAAGGGAGCUCUA | 73086.3 | 705828.0 | 128364.6 | 69978.8 |
| hsy-miR160a-i-5p | UGCCUGGCUCCCUGUAUGCCA | 2219.3 | 1696.4 | 2712.1 | 234.6 |
| hsy-miR164a-n-5p | UGGAGAAGCAGGGCACGUGCA | 3146.3 | 3404.2 | 9193.0 | 1723.5 |
| hsy-miR166a-ag-3p | UCGGACCAGGCUUCAUUCCCC | 115672.5 | 147905.1 | 165733.5 | 117964.7 |
| hsy-miR167a-e-5p | UGAAGCUGCCAGCAUGAUCUAG | 5928.4 | 65750.5 | 2522.2 | 2661.9 |
| hsy-miR171a-ad-3p | UGAUUGAGCCGUGCCAAUAUC | 66336.0 | 3424.6 | 14169.2 | 117303.9 |
| hsy-miR172a-h-3p | AGAAUCUUGAUGAUGCUGCAG | 34125.3 | 36.7 | 147.0 | 13599.2 |
| hsy-miR172i-w-3p | AGAAUCUUGAUGAUGCUGCAU | 5416.6 | 25253.7 | 249.3 | 1050.3 |
| hsy-miR319a-j-3p | UUGGACUGAAGGGAGCUCCC | 56882.1 | 3618.6 | 5617.1 | 88849.6 |
| hsy-miR390a-o-5p | AAGCUCAGGAGGGAUAGCGCC | 160828.4 | 1896.9 | 24151.0 | 7968.8 |
| hsy-miR393a-n-5p | UCCAAAGGGAUCGCAUUGAUC | 109150.5 | 5871.8 | 3223.4 | 21535.8 |
| hsy-miR394a-g-5p | UUGGCAUUCUGUCCACCUCC | 15828.2 | 3599.1 | 10783.2 | 17168.9 |
| hsy-miR396a-i-5p | UUCCACAGCUUUCUUGAACUU | 10204.6 | 84749.3 | 7706.9 | 4273.4 |
| hsy-miR477c-e-5p | AUCUCUCCUUCAAAGGCUUCA | 1785.0 | 3647.1 | 2101.5 | 276.0 |
| hsy-miR482a-3p | UCUUUCCUAGUCCUCCCAUACC | 3714.4 | 3482.5 | 1947.7 | 2950.2 |
| hsy-miR482f-h-3p | UUUUGCCUACACCGCCCAUUCC | 4381.3 | 3243.6 | 3313.9 | 4446.7 |
| hsy-miR482i-j-3p | UCUUUCCUACUCCUCCCAUUCC | 1582.2 | 2598.8 | 1507.5 | 2468.7 |
| hsy-miR535a-5p | UGACAAUGAGAGAGAGCACGC | 5995.3 | 16604.5 | 11901.2 | 5512.4 |
| hsy-miR535b-c-5p | UGACAACGAGAGAGAGCACGC | 237.9 | 14589.4 | 5733.9 | 1122.4 |
| hsy-miR827a-3p | UUAGAUGACCAUCAACAAACG | 1123.5 | 4653.9 | 228.9 | 387.9 |
| hsy-miR-n001a-b-3p | UCAAACAAACUCACAGCCUGU | 25735.4 | 92531.1 | 32381.8 | 14674.1 |
| hsy-miR-n002a-5p | UUUUCCAAGCUGCCCUUUUGCA | 1368.7 | 0.8 | 2.9 | 104.3 |
| hsy-miR-n003a-e-3p | UUUGUCACUAACUUUGUCACU | 28242.5 | 20884.3 | 9905.8 | 5604.4 |
| hsy-miR-n005a-5p | UUCAUAAGAUUGUGCUGAGUU | 15709.3 | 8239.9 | 6067.9 | 5204.2 |
| hsy-miR-n006a-5p.1 | UCCUAAUAAACCACCAUGGUC | 5046.0 | 14205.4 | 4484.5 | 7341.7 |
| hsy-miR-n006b-5p.1 | UCCUAACGAACCACCAUGGUC | 2508.1 | 14222.6 | 2948.8 | 4087.9 |
| hsy-miR-n006a-b-5p.2 | UGUUCCUGCACUGUUUCUUUG | 3983.1 | 12694.9 | 4098.9 | 2324.5 |
| hsy-miR-n007a-5p | UUAAACAACUGUAGGUGACAA | 3120.8 | 16730.1 | 5937.5 | 962.9 |
| hsy-miR-n008a-3p | UGCCUUUUCUUUUAGCUUCUG | 5132.0 | 12214.8 | 4131.0 | 1876.8 |
| hsy-miR-n010a-5p | AUGAAUCUAGUUUCUCUCUUCGU | 252.7 | 10982.2 | 3031.5 | 736.0 |
| hsy-miR-n011a-b-3p | GAAGCCUUUGAGAGGGAGUGG | 5393.2 | 823.3 | 4203.1 | 4978.8 |
| hsy-miR-n013a-5p | UCCUUCACAAAUGUCACAAUA | 1163.8 | 3044.7 | 517.1 | 463.1 |
| hsy-miR-n016a-b-5p | UCUCAUGACUUCAUCGCUUCC | 575.5 | 2312.7 | 673.9 | 835.7 |
| hsy-miR-n017a-5p | UCGUCCAUGCGCGACACGUAC | 1573.7 | 88.9 | 801.5 | 3279.8 |
| hsy-miR-n018a-5p | UUGUCUCCUUUGAAGGCCGCA | 1212.7 | 1575.8 | 984.5 | 532.1 |
| hsy-miR-n020a-5p | UUCCGGCGUCUAUAUAAGAGUC | 1827.5 | 850.2 | 18.5 | 1209.8 |
| hsy-miR-n021a-3p | UCUUCCCAACACCUCCUAUACC | 676.4 | 795.6 | 1310.8 | 723.7 |
*
indicates normalized reads (RP10M)