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. 2001 Aug 1;29(15):3248–3257. doi: 10.1093/nar/29.15.3248

Figure 6.

Figure 6

Optimal secondary structures of type 1a, 1b, 2 and 3 5′-UTR DNA fragments predicted by mfold using TaqExo constraints. The structures were predicted using constraints (A) 90, 161, 173 for type 1a, (B) 33, 90, 161, 173 for type 1b, (C) 33, 85, 89, 173 for type 2a/c and (D) 33, 90, 92, 98, 161, 173 for type 3a (see Fig. 4A) and conditions of 1 M NaCl and 37°C. Polymorphic substitution identifying each genotype are shown in bold. Conserved hairpin structures I–III are indicated. Regions used for designing bridge probes are shown by solid lines and denoted by Arabic numerals.