Table 1.
Sample | Raw reads | Clean reads | Clean bases | Error (%) | Q20 (%) | Q30 (%) | GC (%) |
---|---|---|---|---|---|---|---|
U1-1 | 58,224,342 | 48,368,422 | 7.26G | 0.03 | 95.64 | 87.86 | 49.39 |
U1-2 | 47,095,472 | 45,374,644 | 6.81G | 0.03 | 94.72 | 87.56 | 50.83 |
U1-3 | 56,009,802 | 46,678,280 | 7.00G | 0.03 | 95.62 | 87.87 | 49.83 |
U2-1 | 55,315,794 | 46,736,626 | 7.01G | 0.03 | 95.72 | 88.18 | 51.13 |
U2-2 | 48,475,732 | 46,692,406 | 7.00G | 0.02 | 95.55 | 89.35 | 51.37 |
U2-3 | 50,120,502 | 48,701,208 | 7.31G | 0.02 | 95.26 | 88.85 | 50.03 |
U3-1 | 69,548,006 | 66,545,740 | 9.98G | 0.02 | 95.50 | 89.33 | 49.12 |
U3-2 | 56,517,258 | 46,921,990 | 7.04G | 0.03 | 95.78 | 88.33 | 49.22 |
U3-3 | 52,072,828 | 50,155,980 | 7.52G | 0.02 | 95.23 | 88.72 | 49.41 |
D2-1 | 49,055,962 | 47,988,428 | 7.20G | 0.03 | 94.53 | 86.45 | 49.57 |
D2-2 | 60,296,838 | 58,890,574 | 8.83G | 0.02 | 95.37 | 88.48 | 49.20 |
D2-3 | 46,981,930 | 45,006,560 | 6.75G | 0.02 | 95.80 | 89.26 | 50.27 |