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. 2017 Sep 4;7:10362. doi: 10.1038/s41598-017-10617-2

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© The Author(s) 2017

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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The nonsense mutation of Pid3 alleles at the nucleotide position 2209. Blue “T” represents nonsense mutation. Ind1, ind2 and ind3 are three subgroups of indica rice, indx corresponds to other indica varieties, temp is temperate japonica, trop is tropical japonica, temp/trop and trop/temp are admixed temperate and tropical japonica varieties, japx is other japonica varieties, aus is aus, inax is admixed aus and indica, aro is aromatic, and admix is all other unassigned varieties¹⁸.