TABLE 2.
Draft genomes utilized for phylogenetic analysis
| Isolate | NCBI accession or SRA no. | VPaI type | Sequence type | Reference |
|---|---|---|---|---|
| VP2007-095 | AVOI01000000 | γ | ST631 clade II | 31 |
| 09-4436 | LRAJ01000000 | γ | ST631 clade II | 31 |
| G149 | MPPO00000000 | None | ST631 clade I | This study |
| MAVP-A | MDWP00000000 | γ | ST631 clade II | 31 |
| MAVP-E | LBHP00000000 | γ | ST631 clade II | 31 |
| MAVP-P | MDWQ00000000 | γ | ST631 clade II | 31 |
| MAVP-T | MDWR00000000 | γ | ST631 clade II | 31 |
| MAVP-L | MDWS00000000 | γ | ST631 clade II | 31 |
| MAVP-Q | MDWT00000000 | γ | ST631 clade II | 31 |
| MAVP-R | MPPP00000000 | β | ST631 clade I | This study |
| VP1 | JNSM00000000 | γ | ST631 clade II | 31 |
| VP8 | JNSN01000000 | γ | ST631 clade II | 31 |
| VP9 | JNSO00000000 | γ | ST631 clade II | 31 |
| CTVP27C | NJHM00000000 | γ | ST631 clade II | 31 |
| CTVP31C | NJHL00000000 | γ | ST631 clade II | 31 |
| CTVP34C | NJHK00000000 | γ | ST631 clade II | 31 |
| MAVP-4 | MDWU00000000 | γ | ST631 clade II | 31 |
| MAVP-30 | MDWW00000000 | γ | ST631 clade II | 31 |
| MAVP-39 | MDWV00000000 | γ | ST631 clade II | 31 |
| MAVP-56 | MDWX00000000 | γ | ST631 clade II | 31 |
| S487-4 | LFZE01000000 | γ | ST631 clade II | 31 |
| VP31 | JNSP00000000 | γ | ST631 clade II | 31 |
| VP35 | JNSQ00000000 | γ | ST631 clade II | 31 |
| VP41 | JNSR00000000 | γ | ST631 clade II | 31 |
| VP44 | JNSS00000000 | γ | ST631 clade II | 31 |
| VP45 | JNST00000000 | γ | ST631 clade II | 31 |
| VP47 | SRR4032360 | γ | ST631 clade II | 31 |
| MAVP-74 | MDWY00000000 | γ | ST631 clade II | 31 |
| MAVP-75 | MDWZ00000000 | γ | ST631 clade II | 31 |
| MAVP-78 | MDXA00000000 | γ | ST631 clade II | 31 |
| VP55 | SRR4032361 | γ | ST631 clade II | 31 |
| G6928 | MPPN00000000 | β | ST631 clade I | This study |
| MA561 | MPPM00000000 | β | ST631 clade I | This study |
| MAVP-90 | MPPQ00000000 | γ | ST631 clade II | 31 |
| MAVP-94 | MPPR00000000 | γ | ST631 clade II | 31 |
| MAVP-109 | MPPS00000000 | γ | ST631 clade II | 31 |
| MAVP-112 | MPPT00000000 | γ | ST631 clade II | 31 |
| MEVP-12 | NJHJ00000000 | γ | ST631 clade II | 31 |
| MEVP-14 | NJHI00000000 | γ | ST631 clade II | 31 |
| PNUSAV000012 | SRR4016797 | γ | ST631 clade II | 31 |
| PNUSAV000015 | SRR4016801 | γ | ST631 clade II | 31 |
| PNUSAV00021 | SRR4018053 | γ | ST631 clade II | 31 |
| G4186 | NIYP00000000 | γ | ST34 | This study |
| MAVP-14 | NJAP00000000 | γ | ST324 | This study |
| MAVP-71 | NIXZ00000000 | γ | ST43 | This study |
| MAVP-46 | NJAO00000000 | γ | ST110 | This study |
| MAVP-50 | NIXY00000000 | γ | ST636 | This study |
| MAVP-67 | NIXX00000000 | γ | ST308 | This study |
| MAVP-99 | NIXW00000000 | β | ST12 | This study |
| G3578 | NIYO00000000 | γ | ST674 | This study |
| MAVP-21 | NIXV00000000 | None | ST674 | This study |
| CTVP43C | NIXU00000000 | None | ST162 | This study |
| MAVP-3 | NIXT00000000 | α | ST3 | This study |
| MAVP-25 | NJAN00000000 | β | ST1127 | This study |
| CTVP35C | NIXS00000000 | None | ST194 | This study |
| MAVP-G | NIXR00000000 | β | ST809 | This study |
| MAVP-108 | NIXQ00000000 | β | ST1716 | This study |