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. 2017 Jul 1;11(7):DC32–DC36. doi: 10.7860/JCDR/2017/24810.10277

[Table/Fig-1]:

Primers and thermal conditions in genotyping of H. pylori clinical isolates.

Region amplified Primer sequence
(5′ to 3′)
Size of
amplicon
PCR cycles
glmM-F AAGCTTTTAGGGGTGTTAGGGGTTT 294 bp Initial denaturation at 95 °C for 5 min, followed by 35 cycles of denaturation at 95 °C for 45 sec, annealing at 50 °C for 45 sec and extension at 72 °C for 35 sec. The final extension was at 72 °C for 10 min.
glmM-R AAGCTTACTTTCTAACACTAACGC
oipA-F GTTTTTGATGCATGGGATTT 401 bp 5 min predenaturation at 95 °C, followed by 35 cycles of 35 sec at 95 °C, 35 sec at 53 °C and 35 sec at 72 °C
oipA-R GTGCATCTCTTATGGCTTT
sabA-F CCGCTAGTGTCCAGGGTAAC 364 bp 35 sec at 95 °C, 35 sec at 50 °C and 35 sec at 72 °C
sabA-R CACCGCGATTTGCGTTGGTA
babA2-F AATCCAAAAAGGAGAAAAATATGAAA 832 bp 35 sec at 95 °C, 35 sec at 55 °C and 45 sec at 72 °C.
The final extension was at 72 °C for 5 min.
babA2-R TGTTAGTGATTTCGGTGTAGGACA

F: Forward primer, R: Reverse primer