[Table/Fig-1]:
Region amplified | Primer sequence (5′ to 3′) |
Size of amplicon |
PCR cycles |
---|---|---|---|
glmM-F | AAGCTTTTAGGGGTGTTAGGGGTTT | 294 bp | Initial denaturation at 95 °C for 5 min, followed by 35 cycles of denaturation at 95 °C for 45 sec, annealing at 50 °C for 45 sec and extension at 72 °C for 35 sec. The final extension was at 72 °C for 10 min. |
glmM-R | AAGCTTACTTTCTAACACTAACGC | ||
oipA-F | GTTTTTGATGCATGGGATTT | 401 bp | 5 min predenaturation at 95 °C, followed by 35 cycles of 35 sec at 95 °C, 35 sec at 53 °C and 35 sec at 72 °C |
oipA-R | GTGCATCTCTTATGGCTTT | ||
sabA-F | CCGCTAGTGTCCAGGGTAAC | 364 bp | 35 sec at 95 °C, 35 sec at 50 °C and 35 sec at 72 °C |
sabA-R | CACCGCGATTTGCGTTGGTA | ||
babA2-F | AATCCAAAAAGGAGAAAAATATGAAA | 832 bp | 35 sec at 95 °C, 35 sec at 55 °C and 45 sec at 72 °C. The final extension was at 72 °C for 5 min. |
babA2-R | TGTTAGTGATTTCGGTGTAGGACA |
F: Forward primer, R: Reverse primer