Table S2.
Parameter category | Parameter | Mouse | Vole |
Iterations | 14,000 | 14,000 | |
Degradation | Deg (Protein degradation rate) | 0.076 | 0.076 |
Growth factor | Set (Growth factor threshold) | 0.95 | 0.95 |
Sec (Growth factor secretion rate) | 0.14 | 0.14 | |
Ds (Growth factor diffusion rate) | 1.0 | 1.0 | |
Activator | Act (Activators) | 1.6 | 1.6 |
Da (Activator diffusion rate) | 0.2 | 0.2 | |
Lbi (Lingual bias) | 1.34 | 0.4 | |
Bbi (Buccal bias) | 1.31 | 0.0001 | |
Ina (Initial activator concentration) | 0.0 | 0.0 | |
Inhibitor | Int (Initial inhibitor threshold) | 0.19 | 0.19 |
Inh (Inhibitors) | 800.0 | 800.0 | |
Di (Inhibitor diffusion rate) | 0.2 | 0.2 | |
Epithelium | Egr (Epithelial growth) | 0.013 | 0.013 |
Dgr (Downward vector of growth) | 10,500.0 | 10,500.0 | |
Dff (Differentiation rate) | 0.0002 | 0.0002 | |
Adh (Traction between neighbors) | 0.005 | 0.005 | |
Rep (Young's modulus, stiffness) | 1.5 | 1.5 | |
Ntr (Mechanical traction from the borders to the nucleus) | 0.00013 | 0.00013 | |
Abi (Anterior bias) | 3.2 | 8.0 | |
Pbi (Posterior bias) | 7.0 | 5.0 | |
Mesenchyme | Mgr (Mesenchymal growth) | 16,000.0 | 16,000.0 |
Bgr (Border growth amount in antero-posterior) | 0.2 | 0.2 | |
Boy (Mesenchyme mechanic resistance) | 0.17 | 0.17 | |
Initial size | Rad (Radius of initial conditions) | 3.0 | 3.0 |
Swi (Distance from 0 where the borders are defined) | 1.51 | 1.51 | |
Bwi (Width of border) | 3.4 | 3.4 |
Parameters with different values in mouse and vole simulations are in bold. For parameters, see Materials and Methods and refs. 12 and 31. The model has the mouse parameter values as defaults (it can be downloaded at dead.cthulhu.fi/ToothMaker/).