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. 2017 Sep 5;12(9):e0184314. doi: 10.1371/journal.pone.0184314

Table 1. Lysine riboswitch-regulated operons.

Phylum Order Species Riboswitch regulated operons
Firmicutes Bacillales Macrococcus caseolyticus lysC-asd-dapA-dapB-dapD-amino hydrolase-alr-lysA
Staphylococcus lugdunensis lysC-asd-dapA-dapB-dapD
Staphylococcus pasteuri
Staphylococcus epidermidis
Staphylococcus haemolyticus
Staphylococcus pseudintermedius asd-dapA-dapB-dapD
Exiguobacterium antarcticum lysC-asd-dapA-dapB-dapH-aminotransferase
Exiguobacterium sibiricum
Geobacillus thermoglucosidasius lysC-asd-dapA
Lactobacillales Lactobacillus rhamnosus lysA-dapD-dapA-dapB-asd
Lactobacillus casei
Lactobacillus buchneri
Lactobacillus helveticus
Lactobacillus amylovorus
Lactobacillus acidophilus
Lactobacillus johnsonii
Oenococcus oeni
Leuconostoc sp. lysA-dapD-dapA-dapB and alr-asd
Leuconostoc kimchi
Leuconostoc citreum
Leuconostoc carnosum
Leuconostoc mesenteroides
Clostridiales Clostridium acidurici lysA-lyC-asd-dapA-dapB
Peptoclostridium difficile lysA-asd-dapA-dapB
Clostridium tetani lysA-cyclic beta 1–2 glucan synthetase
Clostridium cellulovorans lysC-lysA and dapA-dapB
Clostridium botulinum A lysC-dapA-lysA
Clostridium cellulolyticum dapA-dapB
Eubacterium eligens
Ethanoligenens harbinense asd-dapA-dapB- acetyltransferase
Caldicellulosiruptor saccharolyticus
Caldicellulosiruptor hydrothermalis
Mahella australiensis asd-dapA-dapB
Oscillibacter valericigenes dapA-dapB-acetyltransferase
Gammaproteobacteria Alteromonadales Pseudoalteromonas haloplanktis dapA-dapD-lysA-hypothetical1-hypothetical2
Pseudoalteromonas sp.
Deltaproteobacteria Bdellovibrionales Bacteriovorax marinus lysC-dapB-dapA-dapD-lysA
Thermotogae Thermotogales Mesotoga prima asd-dapF-dapA-dapB-dapD-lysC-aminotransferase-lysA
Kosmotoga olearia asd-dapF-dapA-dapB-dapD-lysC-aminotransferase
Thermosipho melanesiensis
Thermosipho africanus
Marinitoga piezophila asd-lysA-dapA-dapB-dapD-lysC- aminotransferase-amidohydrolase
Petrotoga mobilis dapA-dapB-dapD-lysC- aminotransferase-amidohydrolase
Thermotoga neapolitana asd-dapF-dapA-dapB-dapD-lysC-lysA-amidohydrolase
Thermotoga maritima
Thermotoga sp.
Thermotoga petrophila
Thermotoga naphthophila
Fusobacteria Fusobacterales Sebaldella termitidis lysA-lysC-dapF-hypothetical-dapA-asd
Leptotrichia buccalis lysA-lysC-dapF
Actinobacteria Coriobacteriales Atopobium parvulum lysA-dapA-dapB
Slackia heliotrinireducens lysA-dapA-dapB-dapD
Acidobacteria Solibacterales Candidatus Solibacterusitatus asd-lysC