Table 1.
Differential Co-Expression between Individual Specific Networks
| Network Pairs | Rewired Edges |
Differential Co-Expression Genes (DCGs) |
|||
|---|---|---|---|---|---|
| Number | Percentage | Number | Percentage | as DEGs | |
| Between diploids | |||||
| A2 vs. D5 | 15,708,780 | 3.36% | 10,849 | 35.46% | 49.62% |
| Between allopolyploids | |||||
| TM1 vs. Yuc | 1,124,591 | 0.24% | 2,738 | 8.95% | 11.98% |
| TM1 vs. AD3 | 2,744,883 | 0.59% | 4,875 | 15.94% | 24.84% |
| Yuc vs. AD3 | 799,532 | 0.17% | 1,999 | 6.53% | 8.05% |
| Syn vs. TM1 | 5,174,383 | 1.11% | 7,658 | 25.03% | 28.44% |
| Syn vs. Yuc | 962,655 | 0.21% | 2,267 | 7.41% | 22.28% |
| Syn vs. AD3 | 3,286,858 | 0.70% | 5,849 | 19.12% | 30.91% |
| Between allopolyploid and diploid | |||||
| TM1 vs. A2 | 3,676,001 | 0.79% | 6,804 | 22.24% | 38.05% |
| TM1 vs. D5 | 19,240,674 | 4.11% | 10,600 | 34.65% | 44.31% |
| Yuc vs. A2 | 1,982,313 | 0.42% | 4,479 | 14.64% | 34.05% |
| Yuc vs. D5 | 4,843,495 | 1.04% | 6,654 | 21.75% | 36.08% |
| AD3 vs. A2 | 3,636,533 | 0.78% | 6,409 | 20.95% | 41.39% |
| AD3 vs. D5 | 1,1697,128 | 2.50% | 9222 | 30.15% | 38.60% |
| Syn vs. A2 | 568,595 | 0.12% | 1883 | 6.16% | 12.11% |
| Syn vs. D5 | 891,335 | 0.19% | 1998 | 6.53% | 10.81% |