Table 2.

Comparison of seven different methods in the PrediXcan gene set test in the WTCCC data

Disease	ENET	BayesR	BVSR	LMM	MultiBLUP	rjMCMC	DPR
							VB	MCMC
T1D	21	22	16	23	22	24	26	25
CD	6	0	1	4	4	5	3	6
RA	7	1	5	9	8	7	8	7
BD	0	0	0	0	0	0	0	0
CAD	0	0	0	0	0	0	0	0
HT	0	0	0	0	0	0	0	0
T2D	0	0	0	0	0	0	0	0
Total	34	23	22	36	34	36	37	38

The table lists the number of genes passing the genome-wide significance threshold via Bonferroni correction (α = 1.15 × 10⁻⁵) in each of the seven common diseases. For each disease, we colored the best method with red and the second best method with blue