Table 2.
Energy production and conversion (C)a.
| NCBI GI | Gene ID | Gene | Protein description | Loc.b | Signal peptide | Mean ratio(I/C) | SD | Ratio |
|---|---|---|---|---|---|---|---|---|
| NADH dehydrogenase complex (Complex I) | ||||||||
| GI:82615783 | BAB1_0825 | nuoD | NADH dehydrogenase subunit D | C | NO | 0.62 | 0.10 | ↓ |
| GI:82699683 | BAB1_0826 | nuoE | NADH dehydrogenase subunit E | C | NO | 0.57 | 0.04 | ↓ |
| GI:82615785 | BAB1_0827 | nuoF | NADH dehydrogenase subunit F | C | NO | 0.50 | 0.08 | ↓ |
| GI:82699685 | BAB1_0828 | nuoG | NADH dehydrogenase subunit G | C | NO | 0.56 | 0.09 | ↓ |
| Cytochrome b-c1 complex (Complex III) | ||||||||
| GI:82616452 | BAB1_1559 | petA | Rieske iron-sulfur domain | CM | NO | 0.39 | 0.06 | ↓ |
| Cytochrome c oxidase (Complex IV) | ||||||||
| GI:82615378 | BAB1_0389 | ccoP | cytochrome c heme-binding domain | CM | NO | 0.61 | 0.11 | ↓ |
| F0F1 ATP Synthase (Complex V) | ||||||||
| GI: 82700580 | BAB1_1808 | F0F1 ATP synthase subunit gamma | U | NO | 1.55 | 0.01 | ↑ | |
| GI: 82700581 | BAB1_1809 | atpA | F0F1 ATP synthase subunit alpha | C | NO | 1.39 | 0.12 | ↑ |
| GI: 82700582 | BAB1_1810 | atpH | F0F1 ATP synthase subunit delta | C | NO | 0.59 | 0.15 | ↓ |
| Tricarboxylic acid (TCA) cycle | ||||||||
| GI: 82699012 | BAB1_0090 | AcnA | aconitate hydratase | C | NO | 0.54 | 0.11 | ↓ |
| GI: 82616088 | BAB1_1170 | gltA | citrate synthase | C | NO | 1.38 | 0.12 | ↑ |
| GI: 82700033 | BAB1_1221 | isocitrate dehydrogenase | C | NO | 1.31 | 0.13 | ↑ | |
| GI: 82616792 | BAB1_1926 | sucC | Succinyl-CoA synthetase subunit beta | C | NO | 1.58 | 0.02 | ↑ |
| Pyruvate dehydrogenase complex | ||||||||
| GI: 82699966 | BAB1_1149 | E3 | dihydrolipoamide dehydrogenase E3 | C | NO | 1.82 | 0.23 | ↑ |
| GI: 82699967 | BAB1_1150 | E2 | branched-chain alpha-keto acid dehydrogenaseE2 | C | NO | 1.37 | 0.09 | ↑ |
| GI: 82699968 | BAB1_1151 | E1 | pyruvate dehydrogenase subunit beta E1 | C | NO | 1.96 | 0.26 | ↑ |
| GI: 82699969 | BAB1_1152 | E1 | dehydrogenase, E1 component | C | NO | 1.77 | 0.23 | ↑ |
| Oxoglutarate dehydrogenase complex | ||||||||
| GI: 82700688 | BAB1_1922 | sucB | dihydrolipoamide acetyltransferase | C | NO | 1.61 | 0.35 | ↑ |
| GI: 82700689 | BAB1_1923 | sucA | alpha-ketoglutarate decarboxylase | C | NO | 1.25 | 0.02 | ↑ |
| Others | ||||||||
| GI: 82698965 | BAB1_0036 | cytochrome c heme-binding site:cytochrome c, class IA/ IB | CM | NO | 0.51 | 0.08 | ↓ | |
| GI:82615422 | BAB1_0435 | FAD linked oxidase C | C | NO | 1.37 | 0.03 | ↑ | |
| GI:82700730 | BAB1_1971 | etfA | electron transfer flavoprotein alpha subunit | U | NO | 1.47 | 0.11 | ↑ |
| GI:82700731 | BAB1_1972 | etfB | electron transfer flavoprotein subunit beta | C | NO | 1.56 | 0.11 | ↑ |
| GI: 83269185 | BAB2_0261 | pntA | RecA DNA recombination protein:alanine dehydrogenase/PNT | CM | NO | 1.26 | 0.01 | ↑ |
| GI: 83269262 | BAB2_0346 | 3-isopropylmalate dehydrogenase | C | NO | 1.46 | 0.17 | ↑ | |
| GI: 83269417 | BAB2_0518 | bifunctional proline dehydrogenase | C | NO | 0.73 | 0.01 | ↓ | |
| GI: 83269759 | BAB2_0904 | narG | nitrate reductase alpha subunit | U | NO | 0.62 | 0.13 | ↓ |
aAbbreviations of assigned functional categories (http://www.ncbi.nih.gov/COG/).
bAbbreviations of cellular location. Protein cellular location was annotated by PSORTB v. 3.0 (http://www.psort.org/). C, cytoplasmic; P, periplasmic; U, unknown; CM, cytoplasmic
membrane.
Mean ratio (I/C), indicates the mean values of all I/C ratios with P < 0.05.
SD, indicates standard deviation of the mean.