Table 4.
Translation, ribosomal structure and biogenesis (J)a.
NCBI GI | Gene ID | Gene | Protein description | Loc.b | Signal peptide | Mean ratio(I/C) | SD | Ratio |
---|---|---|---|---|---|---|---|---|
Ribosomal proteins | ||||||||
GI:82615467 | BAB1_0480 | rpsF | 30S ribosomal protein S6 | C | NO | 0.80 | 0.01 | ↓ |
GI:82700001 | BAB1_1184 | rpsB | 30S ribosomal protein S2 | C | NO | 0.73 | 0.10 | ↓ |
GI:82700063 | BAB1_1251 | rpsS | 30S ribosomal protein S19 | C | NO | 0.79 | 0.02 | ↓ |
GI:82616165 | BAB1_1252 | rplB | 50S ribosomal protein L2 | C | NO | 0.62 | 0.02 | ↓ |
GI:82616167 | BAB1_1254 | rplD | 50S ribosomal protein L4 | C | NO | 0.54 | 0.03 | ↓ |
GI:91207342 | BAB1_1267 | rplA | 50S ribosomal protein L1 | C | NO | 0.78 | 0.04 | ↓ |
GI:82700871 | BAB1_2124 | rplT | 50S ribosomal protein L20 | C | NO | 0.59 | 0.07 | ↓ |
Others | ||||||||
GI:82699075 | BAB1_0159 | raiA | protein/ribosomal protein S30EA | U | NO | 0.66 | 0.02 | ↓ |
GI:82699088 | BAB1_0172 | Rph | ribonuclease PH | C | NO | 1.54 | 0.11 | ↑ |
GI:82699769 | BAB1_0918 | gatB | aspartyl/glutamyl-tRNA amidotransferase subunit B | C | NO | 1.41 | 0.15 | ↑ |
GI:82699781 | BAB1_0930 | ribonuclease E and G | C | NO | 1.36 | 0.11 | ↑ | |
GI:82699998 | BAB1_1181 | frr | ribosome recycling factor | C | NO | 0.79 | 0.04 | ↓ |
GI:82700035 | BAB1_1223 | alaS | alanyl-tRNA synthetase | C | NO | 1.33 | 0.04 | ↑ |
GI:82700083 | BAB1_1271 | ef_Tu | elongation factor Tu | U | NO | 1.45 | 0.04 | ↑ |
GI:82616743 | BAB1_1872 | prfA | peptide chain release factor 1 | C | NO | 1.43 | 0.16 | ↑ |
GI:82939410 | BAB2_0198 | 16S rRNA uridine-516 pseudouridylate synthase | C | NO | 1.28 | 0.02 | ↑ |
aAbbreviations of assigned functional categories (http://www.ncbi.nih.gov/COG/).
bAbbreviations of cellular location. Protein cellular location was annotated by PSORTB v. 3.0 (http://www.psort.org/). C, cytoplasmic; P, periplasmic; U, unknown; CM, cytoplasmic
membrane.
Mean ratio (I/C), indicates the mean values of all I/C ratios with P < 0.05.
SD, indicates standard deviation of the mean.