Table 5.
Posttranslational modification, protein turnover, chaperones (O)a.
| NCBI GI | Gene ID | Gene | Protein description | Loc.(b) | Signal peptide | Mean ratio (I/C) | SD | Ratio |
|---|---|---|---|---|---|---|---|---|
| Oxidoreductases-Peroxidases | ||||||||
| GI:82699792 | BAB1_0941 | bcp | Alkyl hydroperoxide reductase | C | NO | 0.75 | 0.03 | ↓ |
| GI:83269430 | BAB2_0531 | ahpC | Alkyl hydroperoxide reductase | C | NO | 1.92 | 0.59 | ↑ |
| GI:82939705 | BAB2_0532 | ahpD | alkylhydroperoxidase, AhpD | U | NO | 1.48 | 0.12 | ↑ |
| GI:83269711 | BAB2_0848 | Catalase | P | YES | 0.63 | 0.14 | ↓ | |
| Chaperones and folding catalysts | ||||||||
| GI:82699086 | BAB1_0170 | grpE | Molecular chaperone GrpE | C | NO | 1.40 | 0.13 | ↑ |
| GI:82699227 | BAB1_0333 | Hsp33 | Hsp33-like chaperonin | C | NO | 1.62 | 0.20 | ↑ |
| GI:82699332 | BAB1_0446 | dnaJ | heat shock protein DnaJ, N-terminal | C | NO | 0.78 | 0.01 | ↓ |
| GI:82699709 | BAB1_0855 | grxD | glutaredoxin:glutaredoxin-related protein | U | NO | 0.63 | 0.01 | ↓ |
| GI:82700211 | BAB1_1413 | degP | Serine protease family protein | P | YES | 1.30 | 0.02 | ↑ |
| GI:82700479 | BAB1_1703 | ftsH | peptidase M41 | C | YES | 1.34 | 0.07 | ↑ |
| GI:82699956 | BAB1_1138 | clpA | chaperonin ClpA/B | C | NO | 1.23 | 0.05 | ↑ |
| GI:82700707 | BAB1_1944 | ppiC | PpiC-type peptidyl-prolyl cis-trans isomerase | CM | YES | 1.30 | 0.04 | ↑ |
| GI:82700858 | BAB1_2107 | Trx-1 | thioredoxin domain-containing protein | C | NO | 0.44 | 0.05 | ↓ |
| GI:82700877 | BAB1_2130 | dnaJ | cytochrome c heme-binding domain-containing protein | C | NO | 0.51 | 0.06 | ↓ |
| Iron-sulfur cluster assembly | ||||||||
| GI:82699057 | BAB1_0139 | nifU | nitrogen-fixing NifU, C-terminal | C | NO | 1.52 | 0.07 | ↑ |
| GI:82699799 | BAB1_0948 | sufB | cysteine desulfurase activator complex subunit | U | NO | 1.72 | 0.15 | ↑ |
| Peptidases | ||||||||
| GI:82699040 | BAB1_0118 | Zn peptidase superfamily | C | NO | 1.39 | 0.16 | ↑ | |
| GI:82699578 | BAB1_0710 | leucyl aminopeptidase | P | NO | 0.75 | 0.06 | ↓ | |
| GI:82700211 | BAB1_1413 | degP | Serine protease family protein | P | YES | 1.30 | 0.02 | ↑ |
| GI:82700479 | BAB1_1703 | ftsH | peptidase M41 | C | YES | 1.34 | 0.07 | ↑ |
| GI:82616716 | BAB1_1845 | ctpA | carboxyl-terminal protease | CM | NO | 1.36 | 0.13 | ↑ |
| GI:82939548 | BAB2_0358 | dcp | Peptidyl dipeptidase DCP | C | NO | 0.59 | 0.08 | ↓ |
aAbbreviations of assigned functional categories (http://www.ncbi.nih.gov/COG/).
bAbbreviations of cellular location. Protein cellular location was annotated by PSORTB v. 3.0 (http://www.psort.org/). C, cytoplasmic; P, periplasmic; U, unknown;
CM, cytoplasmic membrane.
Mean ratio (I/C), indicates the mean values of all I/C ratios with P < 0.05.
SD, indicates standard deviation of the mean.