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. 2017 Jun 8;45(15):9085–9092. doi: 10.1093/nar/gkx520

Figure 2.

Figure 2.

Phylogenetic relations amongst the 89 Pezizomycotina DHA1 proteins most closely related to Aspergillus nidulans DhaoS. The figure shows a well-defined clade extracted from much larger Maximum Likelihood tree of Pezizomycotina DHA1 proteins that are at least 45% identical to DhaoS (see ‘Results’ section). Approximate Likelihood Ratio Test values are given at each node. Proteins encoded by 36 orthologous genes that contain a strict [D1,2] stwintron are tagged _D and shown in black lettering. Proteins encoded by 28 orthologous genes that harbor an alternatively spliced, [D1,2]/[A2,3] stwintron at the same position are tagged _A and shown in blue lettering. The proteins encoded by nine genes that harbor a canonical phase-2 intron are tagged _C5 and printed in red lettering while those encoded by the two orthologous genes that carry a phase-0 intron are tagged _C3 and printed in green lettering. The 16 DHA1 proteins in the outgroup (labeled _P and shown in gray lettering) are encoded by intron-less ‘nearest paralog’ genes; in Oidiodendron maius, this gene is duplicated (_Pa and _Pb, respectively). The 21 proteins in bold lettering are encoded by orthologous genes that comprise an additional standard intron, 329 nt downstream of the [D1,2] stwintron position.