TABLE 1 .
Paracoccus denitrificans genes discussed in this paper
| Gene no. | Gene name | Function |
|---|---|---|
| Pden_0876 | pdeA | cdGMP phosphodiesterase (predicted to be inactive) |
| Pden_1689 | hmp (fhp) | NO denitrosylase |
| Pden_1690 | nsrR1 | NO-sensitive repressor NsrR |
| Pden_2025 | pdeB | cdGMP phosphodiesterase |
| Pden_2411 | bapD | TISS outer membrane protein |
| Pden_2412 | bapC | TISS membrane fusion protein |
| Pden_2413 | bapB | TISS ABC transporter |
| n/aa | bapA | TISS-secreted RTX family agglutinin |
| Pden_3024 | nsrR2 | NO-sensitive repressor NsrR |
| Pden_3025 | ytfE | RIC family [Fe-S] repair protein |
| Pden_3719 | hnoX | H-NOX protein |
| Pden_3720 | dgcA | Diguanylate cyclase |
| Pden_3982 | dgcB | Diguanylate cyclase (fused to response regulator domain) |
a
n/a, the bapA gene is not present in the original annotation of the P. denitrificans genome and so does not have a Pden gene number. The reading frame is present in the manually curated SEED annotation (http://rast.nmpdr.org/seedviewer.cgi?page=Annotation&feature=fig|318586.4.peg.2260) and has been described by other authors (41).