Skip to main content
. Author manuscript; available in PMC: 2018 Aug 1.
Published in final edited form as: Ticks Tick Borne Dis. 2017 Jun 13;8(5):764–771. doi: 10.1016/j.ttbdis.2017.06.001

Table 1.

Top 5 BLASTP hits for two HO-specific RNA-Seq contigs putatively assigned as TRPA1s exclusive to the HO of adult Dermacentor variabilis from our transcriptome (top) and schematic representation of putative HO-specific TRPA1 partial transcripts in D. variabilis from our transcriptomes aligned with a full-length TRPA1 from C. atrox and a putative TRPA1 from I. scapularis and A. aureolatum using DELTA-BLAST (bottom).1

Sequence Desc. Top 5 Hits Hit Acc. E-value Sim. Bit-Score Len. Pos.
Contig 66838 TRPA1* A. aureolatum JAT98721.1 1e-124 98 385 178 174
TRPA1* I. scapularis XP_002434584.1 8e-82 85 252 143 122
TRPA1* C. borealis APG53778.1 1e-55 51 198 167 86
TRPA1* H. americanus APG53784.1 3e-53 50 186 175 87
TRPA1* L. anatina XP_013406001.1 5e-51 48 185 165 79
Contig 70248 TRPA1* A. aureolatum JAT98721.1 8e-59 91 204 111 101
TRPA1* I. scapularis XP_002434584.1 2e-43 83 151 81 67
TRPA1* C. borealis APG53778.1 2e-21 44 97.8 112 49
TRPA1* S. mimosarum KFM57166.1 3e-21 43 96.7 116 50
TRPA1* P. tepidariorum XP_015910181.1 7e-21 44 95.9 117 51
graphic file with name nihms887305u2.jpg
1

(*) indicates putatively assigned TRPA1 (i.e. partial transcript, TRPA1 homolog, or TRPA1-like protein); “Desc.” is contig identification assignment; “Hit Acc.” is accession number for match to contig; “Sim.” is similarity score between contig and hit, i.e. the extent to which the two sequences are related; “Len.” is amino acid alignment length between contig and hit; “Pos.” is number of exact amino acid matches between query and subject sequence. The numbers on the schematic (bottom) above the protein sequence illustrations represent amino acid positions. BLASTP = protein-protein BLAST; DELTA-BLAST = Domain Enhanced Lookup Time Accelerated BLAST. Matching organisms: Amblyomma aureolatum, Ixodes scapularis (blacklegged tick), Cancer borealis (Jonah crab), Homarus americanus (American lobster), Lingula anatina (duck mussel), Stegodyphus mimosarum (velvet spider), Parasteatoda tepidariorum (common house spider).