Table 1.
Top 5 BLASTP hits for two HO-specific RNA-Seq contigs putatively assigned as TRPA1s exclusive to the HO of adult Dermacentor variabilis from our transcriptome (top) and schematic representation of putative HO-specific TRPA1 partial transcripts in D. variabilis from our transcriptomes aligned with a full-length TRPA1 from C. atrox and a putative TRPA1 from I. scapularis and A. aureolatum using DELTA-BLAST (bottom).1
Sequence | Desc. | Top 5 Hits | Hit Acc. | E-value | Sim. | Bit-Score | Len. | Pos. |
---|---|---|---|---|---|---|---|---|
Contig 66838 | TRPA1* | A. aureolatum | JAT98721.1 | 1e-124 | 98 | 385 | 178 | 174 |
TRPA1* | I. scapularis | XP_002434584.1 | 8e-82 | 85 | 252 | 143 | 122 | |
TRPA1* | C. borealis | APG53778.1 | 1e-55 | 51 | 198 | 167 | 86 | |
TRPA1* | H. americanus | APG53784.1 | 3e-53 | 50 | 186 | 175 | 87 | |
TRPA1* | L. anatina | XP_013406001.1 | 5e-51 | 48 | 185 | 165 | 79 | |
Contig 70248 | TRPA1* | A. aureolatum | JAT98721.1 | 8e-59 | 91 | 204 | 111 | 101 |
TRPA1* | I. scapularis | XP_002434584.1 | 2e-43 | 83 | 151 | 81 | 67 | |
TRPA1* | C. borealis | APG53778.1 | 2e-21 | 44 | 97.8 | 112 | 49 | |
TRPA1* | S. mimosarum | KFM57166.1 | 3e-21 | 43 | 96.7 | 116 | 50 | |
TRPA1* | P. tepidariorum | XP_015910181.1 | 7e-21 | 44 | 95.9 | 117 | 51 | |
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(*) indicates putatively assigned TRPA1 (i.e. partial transcript, TRPA1 homolog, or TRPA1-like protein); “Desc.” is contig identification assignment; “Hit Acc.” is accession number for match to contig; “Sim.” is similarity score between contig and hit, i.e. the extent to which the two sequences are related; “Len.” is amino acid alignment length between contig and hit; “Pos.” is number of exact amino acid matches between query and subject sequence. The numbers on the schematic (bottom) above the protein sequence illustrations represent amino acid positions. BLASTP = protein-protein BLAST; DELTA-BLAST = Domain Enhanced Lookup Time Accelerated BLAST. Matching organisms: Amblyomma aureolatum, Ixodes scapularis (blacklegged tick), Cancer borealis (Jonah crab), Homarus americanus (American lobster), Lingula anatina (duck mussel), Stegodyphus mimosarum (velvet spider), Parasteatoda tepidariorum (common house spider).