Table 1.
Summary of identified cell wall reassembly and degradation related gene families in soybean.
| Gene families involved in reassembly and degradation of cell wall | ||||
|---|---|---|---|---|
| Substrate Category | Gene family | Pfam Domain(s) | CAZy ID | No. of Genes |
| Cell wall loosening | Expansins (EXP) | PF03330, PF01357 | 77 | |
| Yeildins (YLD) | PF00704 | GH18 | 25 | |
| Xyloglucan endotransglucosylases/hydrolases (XTH) | PF00722, PF06955 | GH16 | 58 | |
| Glycoside hydrolases | Endo-1, 4-β-glucanases (EGL) | PF00759 | GH9 | 37 |
| Endo-xylanases (EXL) | PF00331 | GH10 | 11 | |
| Glucan 1, 3- β-glucosidases (GGL) | PF00332, PF07983 | GH17 | 78 | |
| Polygalacturonases (PGL) | PF00295, PF12708 | GH28 | 84 | |
| β -Galactosidases (GL) | PF01301 | GH35 | 41 | |
| Pectin modifying | Pectate and pectin lyases | PF00544, PF04431 | PL1 | 37 |
| Rhamnogalacturonana l lyases | PF06045, PF14686, PF14683 | PL4 | 11 | |
| Pectin methyl esterases (PME) | PF01095 | CE8 | 19 | |
| Pectin acetyl esterases (PAE) | PF03283 | CE13 | 27 | |
| 505 | ||||