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. 2017 Sep 7;7:10765. doi: 10.1038/s41598-017-11370-2

Figure 3.

Figure 3

Three-dimensional complexes of the fluorescent probes 10a (left) and 10b (right) bound to the 5-HT2B receptor obtained from extended molecular dynamics simulation with a total time of 1.6 μs (2 times × 800 ns). The upper panel highlights ligand-receptor interactions of a representative structure. The lower panel includes information about the dynamic properties and stability of the ligand binding by depicting frames each 50 ns along a total simulation time of 800 ns. The RMSD values are calculated for DOI or the fluorescent tag with respect to the average structure at 800 ns.