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. Author manuscript; available in PMC: 2017 Sep 8.
Published in final edited form as: J Mol Biol. 2016 Jun 15;428(14):2847–2859. doi: 10.1016/j.jmb.2016.06.002

Fig. 3.

Fig. 3

Schematic of the thermodynamic assembly of BWYV pseudoknot inferred from simulations at zero force. Besides folded (F) and unfolded (U) states, there are two intermediate state, I1 and I2. The topology of the I1 state is the same as F, except tertiary interactions are absent.