. 2017 Sep 8;12(9):e0184505. doi: 10.1371/journal.pone.0184505

Table 3. Mascot results of identified and non-identified proteins found in 2-DE electrophoresis gels of CON cultures.

Summary of the Mascot search results of identified (shaded grey) (high score and/or high sequence coverage) and non-identified proteins (low score) found in 2-DE electrophoresis gels of CON cultures after 4 and 15 days of incubation and analyzed by MALDI TOF/TOF MS/MS. The “x” indicates proteins present in each condition. The lower the expectation value (e-value), the more significant is the score.

Spot ID	Protein description	Day		Protein accession	Microorganism	Mass (Da)	Protein Score	Score >	e-value	Order	AM
Spot ID	Protein description	4	15	Protein accession	Microorganism	Mass (Da)	Protein Score	Score >	e-value	Order	AM
2	peroxidase		x	gi\|913648761	Achromobacter piechaudii	23911	108	87	0.0004	Burkholderiales
4	flagellar motor protein MotB		x	gi\|503612114	Sphingobium chlorophenolicum	37434	102	87	0.0017	Sphingomonadales	x
5	hemerythrin	x	x	gi\|739609734	Sphingobium quisquiliarum	19421	234	90	2E-16	Sphingomonadales	x
13	MULTISPECIES: molecular chaperone GroEL		x	gi\|493430365	Achromobacter	57416	190	87	2.7E-12	Burkholderiales
14	molecular chaperone GroEL	x	x	gi\|493268672	Sphingobium chlorophenolicum	57331	194	90	0.00017	Sphingomonadales	x
15	MULTISPECIES: glutathione S-transferase	x	x	gi\|158346886	Sphingomonadaceae family	21470	234	90	2E-16	Sphingomonadales	x
19	MULTISPECIES: anthranilate 1,2-dioxygenase small subunit	x	x	gi\|496103626	Sphingomonadaceae family	18116	185	86	7.7E-12	Sphingomonadales	x
30	MULTISPECIES: glutathione S-transferase	x	x	gi\|158346886	Sphingomonadaceae family	21470	191	87	2.1E-12	Sphingomonadales	x
100	OmpA/MotB domain protein		x	gi\|307294285	Sphingobium chlorophenolicum L-1	37434	96	81	0.002	Sphingomonadales
102	acid-coenzyme A ligase		x	gi\|317402668	Achromobacter xylosoxidans C54	60191	93	81	0.004	Burkholderiales
103	chaperone protein DnaK		x	gi\|311104375	Achromobacter xylosoxidans A8	69572	103	81	0.00038	Burkholderiales
105	seryl-tRNA synthetase		x	gi\|307294312	Sphingobium chlorophenolicum L-1	46894	105	81	0.00024	Sphingomonadales	x
106	translation elongation factor Tu 1		x	gi\|311109614	Achromobacter xylosoxidans A8	42919	105	81	0.00024	Burkholderiales
107	10 kDa chaperonin, GroES		x	gi\|94497511	Sphingomonas sp. SKA58	10252	91	81	0.0055	Sphingomonadales	x
108	benzene dioxygenase small subunit		x	gi\|158346882	Sphingomonas sp. LH128	18996	191	81	6E-13	Sphingomonadales	x
110	aconitate hydratase 1	x	x	gi\|307293228	Sphingobium chlorophenolicum L-1	96376	104	81	0.0003	Sphingomonadales	x
111	chaperonin		x	gi\|317405440	Achromobacter xylosoxidans C54	57416	138	81	1.2E-07	Burkholderiales
113	putative oxidoreductase		x	gi\|53720358	Burkholderia pseudomallei K96243	23904	90	81	0.0081	Burkholderiales
201	aconitate hydratase 1	x	x	gi\|307293228	Sphingobium chlorophenolicum L-1	96376	167	81	1.5E-10	Sphingomonadales	x
202	10 kDa chaperonin, GroES	x		gi\|94497511	Sphingomonas sp. SKA58	10252	94	81	0.003	Sphingomonadales	x
203	hypothetical protein SJA_C1-23830	x		gi\|294012369	Sphingobium japonicum UT26S	36651	284	84	5.2E-22	Sphingomonadales	x
1	ABC transporter substrate-binding protein		x	gi\|916882109	Roseivivax halodurans	38117	63	87	13	Burkholderiales
3	electron transfer flavoprotein subunit beta	x	x	gi\|544831343	Sphingobium baderi	26340	59	86	33	Sphingomonadales
6	MULTISPECIES: hypothetical protein		x	gi\|490369075	Enterobacteriaceae	10525	70	87	2.9	Enterobacteriales
7	Elongation Factor Tu, partial	x	x	gi\|399117417	Taylorella asinigenitalis 14/45	17172	61	87	11	Burkholderiales
8	glycine—tRNA ligase subunit beta	x	x	gi\|917070028	Sphingomonas astaxanthinifaciens	73368	86	87	220	Sphingomonadales
9	MULTISPECIES: glutamate dehydrogenase	x	x	gi\|757782327	Gammaproteobacteria	49024	66	87	27	Enterobacteriales
10	hypothetical protein		x	gi\|504827049	Acidovorax sp. KKS102	11788	68	87	3.8	Burkholderiales
11	PKHD-type hydroxylase		x	gi\|759428465	Sphingobium sp. Ant17	24354	79	87	12000	Sphingomonadales	x
17	L-ascorbate-6-phosphate lactonase ulaG	x		gi\|595625006	Klebsiella pneumoniae 30684/NJST258_2	41773	55	87	94	Enterobacteriales
18	transcriptional regulator	x		gi\|565806306	Xanthomonas hortorum	30827	60	87	27	Xanthomonadales
20	DNA gyrase subunit A	x		gi\|670491751	Sphingomonas sp. FUKUSWIS1	101085	64	87	12	Sphingomonadales
21	type I restriction modification DNA specificity domain protein	x		gi\|805605932	Burkholderia pseudomallei MSHR1079	48418	67	87	5.5	Burkholderiales
23	transposase	x		gi\|852159985	Klebsiella pneumoniae	8434	64	87	10	Enterobacteriales
24	protein disulfide-isomerase	x		gi\|916789948	Bradyrhizobium elkanii	23273	72	87	72	Rhizobiales
25	plasmid partitioning protein RepB	x		gi\|516731572	Rhizobium leguminosarum	35961	58	87	42	Rhizobiales
26	hypothetical protein SEEE6482_13432	x		gi\|396069711	Salmonella enterica	12520	51	87	220	Enterobacteriales
28	hypothetical protein M770_18930	x		gi\|532132637	Pseudomonas aeruginosa VRFPA03	16995	74	87	1.2	Pseudomonadales
29	MULTISPECIES: cysteine ABC transporter substrate-binding protein	x		gi\|970415048	Enterobacter	29569	65	87	8.4	Enterobacteriales
31	hypothetical protein OO17_23135	x	x	gi\|763444705	Rhodopseudomonas palustris	8507	81	87	0.24	Rhizobiales
33	MULTISPECIES: (Fe-S)-cluster assembly protein		x	gi\|760372574	Pseudomonas	11704	57	87	51	Pseudomonadales