Table 2.
Nucleotide pools in E. coli throughout the growth curve. E. coli cultures were grown in defined minimal MOPS medium supplemented with 0.4% glucose at 37 °C with vigorous aeration and samples were removed for nucleotide measurements. The cell volumes necessary for calculation of absolute concentrations were estimated using a method provided in Supplementary Methods. The data are plotted as a function of time on (Fig. 4). Growth phase specific values are provided for guanosines and pyrimidines because the quotient was less stable than that for adenosines. When growth phase is not specified, the number provided corresponds to the mean value over all growth phases. 95% CI: 95% confidence interval. NA: not available.
| Nucleotide | Quotient | Concentration | |
|---|---|---|---|
| mean[95% CI], % | mean[95% CI], µM | ||
| Adenosines | ATP | 80[77; 83] | 2200[1900; 2600] |
| ADP | 16[14; 18] | 430[370; 500] | |
| AMP | 3.2[2.7; 3.8] | 88[72; 110] | |
| Guanosines | GTP | 67[62; 72] | 900[760; 1100] |
| exponential | 75[69; 81] | 1100[870; 1400] | |
| transition | 54[44; 67] | 1100[630; 1900] | |
| stationary | 67[61; 73] | 690[530; 880] | |
| GDP | 12[9.7; 15] | 160[130; 200] | |
| exponential | 15[13; 18] | 220[180; 270] | |
| transition | 7.7[4.9; 12] | 180[110; 290] | |
| stationary | 12[7.5; 18] | 120[73; 200] | |
| GMP + IMP | 4[3.4; 4.7] | 58[49; 69] | |
| exponential | 3.9[3.1; 5.0] | 62[48; 80] | |
| transition | 3.6[2.6; 5.0] | 84[58; 120] | |
| stationary | 4.3[3.1; 5.9] | 46[35; 59] | |
| ppGpp | 8.1[5.2; 13] | 120[72; 200] | |
| exponential | 2.7[1.8; 3.9] | 40[25; 67] | |
| transition | 34[23; 50] | 810[420; 1600] | |
| stationary | 13[9.7; 18] | 150[100; 220] | |
| NTPs | CTP | 12[10; 14] | 570[450; 720] |
| exponential | 7.9[4.7; 13] | 360[160;780] | |
| stationary | 13[11; 16] | 710[530; 950] | |
| UTP | 20[18; 23] | 970[790; 1200] | |
| exponential | 12[9.6; 15] | 510[360; 710] | |
| stationary | 24[23; 26] | 1300[1000; 1600] | |
| ATP | 46[44; 48] | ||
| GTP | 20[18; 23] | ||
| exponential | 28[26; 31] | ||
| transition | 15[13; 16] | ||
| stationary | 16[15; 16] | ||
| AEC | ATP, ADP, AMP | 88[86; 90] | |