Table-2.
Name | Physiochemical parameters | Secondary structure predictions | |||||||
---|---|---|---|---|---|---|---|---|---|
Amino acid length | Molecular weight | Theoretical PI | Instability index | Aliphatic index | GRAVY* | α helix | β helix | Transmembrane helix | |
TAP | 64 | 6953.1 | 10.26 | 18.54 | 103.44 | 0.431 | 33 | 30 | 25 |
LAP | 64 | 7041.50 | 11.24 | 50.66 | 95.94 | 0.122 | 47 | 16 | 25 |
DEFB1S1 | 60 | 6665.98 | 8.98 | 28.16 | 102.33 | 0.447 | 48 | 18 | - |
DEFB1S2 | 54 | 6115.0 | 9.30 | 76.97 | 77.59 | -0.519 | 46 | 11 | - |
DEFB3 | 60 | 6764.17 | 11.47 | 18.00 | 97.50 | 0.243 | 23 | 33 | - |
DEFB4 | 63 | 7233.74 | 11.46 | 46.73 | 86.51 | 0.278 | 33 | 25 | - |
DEFB5 | 64 | 7227.73 | 10.47 | 59.02 | 95.78 | 0.380 | 53 | 9 | 25 |
DEFB10 | 62 | 6954.46 | 10.35 | 39.25 | 114.68 | 0.429 | 50 | 13 | - |
DEFB103 | 67 | 7614.31 | 9.93 | 40.62 | 106.27 | 0.185 | 52 | 18 | 24 |
TAP=Tracheal antimicrobial peptide, LAP=Lingual antimicrobial peptide, DEFB1S1 and DEFB1S2=Splice variants of β-defensin 1 peptide, DEFB3=β-defensin 3 peptide, DEFB4=β-defensin 4 peptide, DEFB5=β-defensin 5 peptide, DEFB10=β-defensin 10 peptide, DEFB103=β-defensin 103 peptide,
GRAVY=Grand average of hydropathicity, PI=Isoelectric point