Table 1. Formal Analogy of the Description of FRET and Anisotropy for Homogeneous Quenching/Rotation in the Absence of Conformational Dynamicsa.
observables | FRET | anisotropy |
---|---|---|
specific fluorescence intensity decays | fD|D(DA)(t) | |
fD|D(D0)(t) | ||
intensity-independent quantifier | ||
species fraction of no FRET molecules/residual anisotropy | xnoFRET | r∞ |
direct interpretation of intensity-independent quantifier | εD(t) = xnoFRET+∑ixRET(i)e–kRET(i)t | |
steady-state quantifier by time-resolved measurements | ||
derived steady-state values for single exponential decays |
E is the FRET efficiency eq 1; kRET is the rate constant of the FRET process eq 9. τD(0) = 1/kD is the lifetime of the donor in the absence of an acceptor, and τD(A) = 1/(kD + kRET) is the lifetime of the donor in the presence of an acceptor. εD(t) is the FRET-induced donor decay. The letters V (vertical) and H (horizontal) represent the polarization of the excitation (first letter) and detection (second letter), respectively. Ideally, the time-resolved anisotropy decay r(t) is obtained by the difference fΔ and the sum f∑ of the experimental measurable intensity decays fVV and fVH. r is the steady-state anisotropy. ρ is the rotational correlation time.