Table 3.
Number of features [# f.], precision [P.], recall [R.], F1 score [F1] of classifier top performances by dimensionality reduction technique.
| Naïve Bayes | SVM (linear kernel) | SVM (RBF kernel) | MaxEnt | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| # f. | P. | R. | F1 | # f. | P. | R. | F1 | # f. | P. | R. | F1 | # f. | P. | R. | F1 | |
| Full feature space | 45,695 | 0.761 | 0.635 | 0.688 | 45,695 | 0.744 | 0.802 | 0.769 | 45,695 | 0.714 | 0.829 | 0.765 | 45,695 | 0.740 | 0.790 | 0.762 |
| PCA | 333 | 0.541 | 0.957 | 0.691 | 426 | 0.739 | 0.798 | 0.765 | 426 | 0.709 | 0.825 | 0.760 | 426 | 0.737 | 0.790 | 0.760 |
| MI | 228 | 0.628 | 0.821 | 0.710 | 2,284 | 0.746 | 0.799 | 0.770 | 22,847 | 0.728 | 0.825 | 0.772 | 11,423 | 0.753 | 0.775 | 0.761 |
| Ontology | 32,180 | 0.872 | 0.689 | 0.766 | 32,180 | 0.762 | 0.795 | 0.774 | 32,180 | 0.747 | 0.760 | 0.747 | 32,180 | 0.733 | 0.806 | 0.764 |
| Ontology PCA | 210 | 0.538 | 0.942 | 0.684 | 405 | 0.748 | 0.779 | 0.758 | 405 | 0.718 | 0.775 | 0.741 | 405 | 0.726 | 0.810 | 0.763 |
| Ontology MI | 24,135 | 0.879 | 0.693 | 0.771 | 1,605 | 0.747 | 0.798 | 0.769 | 1,605 | 0.715 | 0.795 | 0.747 | 8,027 | 0.723 | 0.790 | 0.752 |
Note: Performance of shaded region is the simplest model that is not significantly different from the top overall model (i.e., F1 of 77.4%).