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. Author manuscript; available in PMC: 2018 Aug 1.
Published in final edited form as: J Biomed Inform. 2017 Jun 27;72:23–32. doi: 10.1016/j.jbi.2017.06.019

Table 3.

Number of features [# f.], precision [P.], recall [R.], F1 score [F1] of classifier top performances by dimensionality reduction technique.

Naïve Bayes SVM (linear kernel) SVM (RBF kernel) MaxEnt
# f. P. R. F1 # f. P. R. F1 # f. P. R. F1 # f. P. R. F1
Full feature space 45,695 0.761 0.635 0.688 45,695 0.744 0.802 0.769 45,695 0.714 0.829 0.765 45,695 0.740 0.790 0.762
PCA 333 0.541 0.957 0.691 426 0.739 0.798 0.765 426 0.709 0.825 0.760 426 0.737 0.790 0.760
MI 228 0.628 0.821 0.710 2,284 0.746 0.799 0.770 22,847 0.728 0.825 0.772 11,423 0.753 0.775 0.761
Ontology 32,180 0.872 0.689 0.766 32,180 0.762 0.795 0.774 32,180 0.747 0.760 0.747 32,180 0.733 0.806 0.764
Ontology PCA 210 0.538 0.942 0.684 405 0.748 0.779 0.758 405 0.718 0.775 0.741 405 0.726 0.810 0.763
Ontology MI 24,135 0.879 0.693 0.771 1,605 0.747 0.798 0.769 1,605 0.715 0.795 0.747 8,027 0.723 0.790 0.752

Note: Performance of shaded region is the simplest model that is not significantly different from the top overall model (i.e., F1 of 77.4%).