Table 1. Genome characteristics for the scaled quail (Callipepla squamata) v1.0, bobwhite (Colinus virginianus) v2.0, and bobwhite 1.1 (accession: AWGT01000000) genome assemblies.
Genome Characteristicsa | Scaled Quail 1.0 | Bobwhite 2.0 | Bobwhite 1.1b |
---|---|---|---|
Total scaffold length | 1,045,281,893 bp | 1,254,146,751 bp | 1,095,702,334 bp |
Scaffold length excluding gaps (N’s) | 1,016,929,532 bp | 1,134,249,133 bp | 971,740,276 bp |
Total scaffolds | 34,302 | 42,369 | 65,748 |
N50 scaffold size | 1,035,259 bp | 2,042,136 bp | 49,503 bp |
Largest scaffold | 4,990,493 bp | 14,292,544 bp | 600,658 bp |
Average coverage | 292× | 122× | 77× |
Scaffolds capturing 90% total length | 1313 | 8990 | 25,837 |
Scaffolds shorter than 1 kb are excluded from the assemblies.
First-generation scaffolded bobwhite assembly (Halley et al. 2014).