Table 1. Glossary of simulation terms.
Variable | Definition |
---|---|
μ(j,t) | Mutation rate per site per chromosome for population j at time t |
s(j,t,x)a | Selection coefficient for a mutation at frequency x in population j at time t |
h(j,t)b | Dominance of allele for population j at time t |
F(j,t)c,d | Inbreeding coefficient in population j at time t |
N(j,t)d | Number of individuals in population j at time t |
Ne(j,t)d | Effective number of chromosomes in population j at time t |
m(k,j,t) | Migration: proportion of chromosomes from population k in population j at time t |
L | Number of sites in simulation |
s = 0 (neutral), 0 > s > −1 (purifying selection), and 0 < s (positive selection).
h = 1 (dominant), h = 0 (recessive), h > 1 / h < 0 (over-/underdominant), and 0 < h < 1 (codominant).
F = 1 (haploid), F = 0 (diploid), and 0 < F < 1 (inbred diploid).
Ne = 2 × N / (1 + F).