Table 1.
Genomic attributes of Epulopiscium clade bacteria from Red Sea surgeonfishes affiliated with the genera Acanthurus and Naso
| Genome ID | Host (source) | Subclade* | Size, Mbp | Scaffolds | Completeness†, % | GC, % | Coverage‡, × | Coding, % | Protein-coding genes | |
| Counts | % with function | |||||||||
| SCG-B05WGA | A. nigrofuscus | Type A1 | 3.00 | 145 | 93.9 | 31.1 | 213 | 82 | 2,440 | 78 |
| SCG-B11WGA | A. nigrofuscus | Type A1 | 3.38 | 109 | 96.5 | 31.3 | 368 | 81 | 2,718 | 76 |
| SCG-D08WGA | A. sohal | Type A1 | 2.16 | 316 | 81.9 | 30.0 | 63 | 71 | 1,574 | 79 |
| SCG-C06WGA | A. nigrofuscus | Type A1 | 1.10 | 160 | 38.3 | 31.4 | 37 | 82 | 948 | 79 |
| PG-AS2M_MBin02 | A. sohal | Type A1 | 2.43 | 403 | 80.8 | 29.3 | 13 | 67 | 1,779 | 76 |
| SCG-C07WGA | A. nigrofuscus | Type A2 | 2.48 | 89 | 88.2 | 30.4 | 128 | 83 | 1,973 | 76 |
| SCG-B10WGA | A. nigrofuscus | Type A2 | 0.69 | 172 | 24.6 | 31.3 | 251 | 61 | 488 | 68 |
| PG-AS2M_MBin0 | A. sohal | Type B | 3.19 | 166 | 94.7 | 33.9 | 35 | 78 | 2,165 | 75 |
| SCG-B10WGA | A. nigrofuscus | Type B | 1.09 | 338 | 31.7 | 34.9 | 579 | 58 | 743 | 63 |
| PG-Nele67M_MBin01 | N. elegans | Type C | 1.88 | 242 | 79.0 | 34.1 | 69 | 78 | 1,522 | 76 |
| PG-Nele67M_MBin02 | N. elegans | Type J | 2.09 | 90 | 87.1 | 32.3 | 34 | 81 | 1,702 | 70 |
| PG-Nele67M_MBin03 | N. elegans | Type J | 2.88 | 229 | 84.9 | 34.5 | 31 | 82 | 2,475 | 62 |
| PG-Nuni2H_MBin01 | N. unicornis | Type C | 2.71 | 88 | 96.2 | 34.5 | 16 | 87 | 2,185 | 77 |
| PG-Nuni2H_MBin03 | N. unicornis | Type J | 1.85 | 221 | 84.6 | 32.5 | 10 | 85 | 1,656 | 82 |
Additional information is provided in Dataset S3. PG, population genome; SCG, single-cell genome.
*
Based on phylogenetic inference as shown in Fig. 3A and SI Appendix, Fig. S3.
†
Estimated using CheckM (64).
‡
For population genomes, coverage is estimated based on the respective metagenomic data.