Abstract
Chemoresistance contributes to cancer relapse and increased mortality in a variety of cancer types, raising a pressing need to better understand the underlying mechanism. MUC1 is abnormally overexpressed in numerous carcinomas and associated with poor prognosis. However, the functional significance of MUC1 in chemoresistance has not been fully elucidated. Here, we showed that MUC1 expression was considerably induced in cells that had acquired chemoresistance at both transcriptional and post-translational levels. Using gain- and loss-of function approaches, we demonstrated a critical role of MUC1 in induction of drug resistance. Through stimulation of EGFR activation and nuclear translocation, MUC1 increased the expression of ATP-binding cassette transporter B1 (ABCB1). Remarkably, targeted suppression of EGFR or ABCB1 by both shRNAs and inhibitors effectively reversed chemoresistance. Moreover, co-administration of the inhibitors of MUC1–EGFR–ABCB1 with paclitaxel significantly blocked not only tumor growth but also relapse in xenograft mouse model. Our data collectively support a model in which MUC1 induces acquired chemotherapy resistance by upregulating ABCB1 in an EGFR-dependent manner, providing a novel molecular basis of using the EGFR inhibitor in MUC1-positive cancers to prevent chemotherapy resistance.
Chemoresistance is one of the important mechanisms responsible for tumor recurrence and poor prognosis in a variety of cancer types.1, 2, 3 Paclitaxel (PTX) is a tubulin-disrupting drug in the management of a wide range of tumors.4, 5, 6 Although studies have uncovered the mechanisms of PTX resistance in several malignancies, many critical issues remain, warranting further investigation. ATP-binding cassette (ABC) transporters are shown to selectively pump out cytotoxic drugs from cells resulting in multidrug resistance.7 The human ABC transporter B1 (ABCB1), also known as p-glycoprotein (Pgp), is one of the well-characterized ABC transporters with the broadest substrate specificity. Many chemotherapy drugs for cancer are substrates for ABCB1, including PTX, vincristine, doxorubicin and etoposide.8, 9 ABCB1 is found overexpressed in cancer patients with poor response to chemotherapy.10, 11, 12 To overcome ABCB1-induced chemoresistance, several pharmacological inhibitors have been developed but with limited success in clinic because of toxicities, which is primarily attributed to the critical functions of ABC transporters in various normal tissues in the physiological clearance of catabolites and xenobiotics.13, 14
Mucin 1 (MUC1) is a transmembrane glycoprotein. In normal tissues, MUC1 distributes on the apical surface of luminal epithelial cells and forms a mucinous gel with other mucin members to protect the underlying epithelia.15, 16 However, MUC1 is aberrantly glycosylated and overexpressed in many carcinomas and associated with poor outcomes,17, 18 including cervical cancer19 and lung cancer.20 Abundant evidence indicates oncogenic functions for MUC1, which (1) promotes receptor tyrosine kinases activation and downstream signaling21, 22 (2) attenuates the apoptotic response to genotoxic and oxidative stress23 and regulates the Wnt/β-catenin,24, 25 p53,26, 27 matrix metallopeptidase (MMP13)28 and NF-κB29 pathways. Moreover, overexpression of MUC1 is found to induce transformation in cells and transgenic mouse models.15, 18 Recently, increasing evidence demonstrated a pivotal role of MUC1 in therapeutic resistance in certain tumor types.30 MUC1-regulated genes are highly predictive of clinical outcome in breast and lung cancer patients.20, 31 Overexpression of MUC1-C induced chemotherapeutic resistance in pancreatic cancer cells by elevating multidrug resistance protein-1 (MRP1, ABCC1).32 Our previous studies also demonstrated that MUC1-C associated with ataxia telangiectasia mutated (ATM) and H2AX, protected against IR-induced cell death.33
In this study, we aimed at investigating the relationship between MUC1 and PTX resistance, and dissecting the molecular mechanism underlying the chemoresistance. We found that PTX induced MUC1, which then contributed to chemoresistance by upregulation of ABCB1 through cooperation with nuclear EGFR. Our work uncovered a novel mechanism for MUC1-mediated regulation of ABCB1, carrying important therapeutic implication in overcoming the chemoresistance of MUC1-positive tumors.
Results
MUC1 expression is induced during acquired chemoresistance
Analysis of ONCOMINE database revealed an overexpression of MUC1 in cervical cancer (Supplementary Figure S1A) and lung cancer (Supplementary Figure S1B). Given the association of MUC1 with chemoresistance, we made an attempt to investigate a potential involvement of MUC1 in chemoresistance in cervical cancer and pulmonary mucoepidermoid lung carcinoma (PMC). We first established a cervical PTX-resistant cell line HeLa229/TR. Long-term treatment with PTX resulted in a substantial induction of MUC1 expression at the mRNA and protein level in HeLa229/TR cells (Figure 1a), which was accompanied with approximately 15-folds increase of IC50 value over that of HeLa229 parental cells (Supplementary Figure S1C). A similar strategy was also used with PMC cell line NCI-H292. The results showed that increased MUC1 expression by PTX treatment was associated with induction of chemoresistance (Figure 1b and Supplementary Figure S1D).
We next examined the role of MUC1 in modulation of cancer cell response to therapy by monitoring MUC1 expression in HeLa229 parental cells treated with PTX. RT-qPCR revealed that the expression of MUC1 mRNA was significantly induced by PTX (Figure 1c), especially at the dose of 5 nM. The induction of MUC1 by 10 and 15 nM PTX was also readily evident but relatively modest. We further substantiated PTX-induced transcription of MUC1 by performing a MUC1 promoter-based transactivation assay. Transcription activity showed a similar pattern to the induction of mRNA (Figure 1d). The results together indicate that PTX transcriptionally upregulated MUC1 expression. We next examined the effect of PTX on MUC1 at the protein level. Both MUC1-N and MUC1-C protein levels were considerably elevated in a dose-dependent manner in PTX-treated cells (Figure 1e). Time-course experiment revealed that treatment of HeLa229 cells with 5 nM PTX resulted in increase in MUC1 protein as early as 48 h (Supplementary Figure S1E). Interestingly, we found that MUC1 protein began to increase at 5 nM but did not further increase at 15 nM. The data suggested a mechanism in addition to transcriptional regulation in PTX-induced MUC1 level. To test this possibility, HeLa229 cells were transiently transfected with MUC1-HA and were exposed to 10 nM PTX. Western blot with an anti-HA antibody indicated that the exogenously expressed MUC1 was also induced by PTX (Figure 1f). Similar results were also seen in HEK293T cells with stably expressed MUC1-HA (Figure 1g). The results indicated a mechanism of post-transcriptional regulation of MUC1 by PTX. Consistence with this notion, half-life assay showed a longer half-life of MUC1 in PTX treatment cells (~12 h) than the control cells (~5 h) (Figure 1h and Supplementary Figure S1F). The results together suggest that PTX treatment upregulated MUC1 transcriptionally as well as post-translationally.
MUC1 modulates chemosensitivity in both cancers
To investigate whether PTX-induced MUC1 was responsible for the observed resistance in cancer cells, we silenced the expression of MUC1 in HeLa229/TR cells. Measurement of the cell response to PTX revealed that the resistance to PTX was significantly diminished upon silencing MUC1 expression in HeLa229/TR (Figures 2a and b and Supplementary Figure S2A), confirming a critical role of MUC1 in the acquired PTX resistance. Knockdown of MUC1 expression in NCI-H292 also indicated an important role of MUC1 in PTX resistance (Figures 2c and d and Supplementary Figure S2B), similar to that in HeLa229. To further substantiate the contribution of MUC1 to the chemosensitivity, we used a different approach to silence MUC1 in HeLa229. Western blot confirmed that the expression of MUC1 was efficiently attenuated in two separate clones expressing the shMUC1-A and shMUC1-B plasmids, respectively (Figure 2e). The results showed that silencing MUC1 expression significantly reduced survival in PTX-treated cells (Figure 2f) and IC50 values for PTX (Supplementary Figure S2C). Of note, silencing MUC1 has little effect on cell viability and proliferation ratio of HeLa229/TR (Supplementary Figure S2D) and HeLa229 cells (Supplementary Figure S2E). We further validated the role of MUC1 by a rescue experiment. Introducing a shMUC1-B-resistant MUC1-HA (Figure 2g) back to HeLa229/shMUC1-B cells restored the resistance to PTX (Figure 2h). These data collectively support that MUC1 has an important role in modulating cancer cell sensitivity to PTX.
MUC1 elevates ABCB1 upon chemotherapy
It has been widely observed that increased expression of ABC transporters contribute to multidrug resistance in cancer cells.34 We thus asked whether ABC transporters may be involved in MUC1-dependent chemoresistance. To this end, we compared MUC1-deficient cells with proficient cells for the expression of ABC transporters. Among nine known transporters associated with PTX resistance, the mRNA (Supplementary Figure S3A) and protein level (Supplementary Figure S3B) of ABCB1 were significantly downregulated in HeLa229/shMUC1s when compared with HeLa229/shCTL cells. In line with the MUC1-dependent regulation of ABCB1 expression, PTX substantially induced both ABCB1 mRNA (Supplementary Figure S3C) and protein (Figure 3a) in HeLa229/shCTL cells and this effect of PTX was abolished in HeLa229/shMUC1 cells. To exclude the possibility of off-target effect, we performed a rescue experiment by re-expressing MUC1-HA back to HeLa229/shMUC1-B cells. Data showed that re-expression of MUC1 restored ABCB1 expression (Figure 3b). In agreement with this notion, both mRNA (Figure 3c left) and protein levels (Figure 3c right) of ABCB1 were upregulated in HeLa229/TR cells when compared with HeLa229 parental cells. This MUC1-dependent ABCB1 regulation was further supported by that silencing MUC1 in HeLa229/TR cells resulted in reduction of both ABCB1 mRNA (Figure 3e left) and protein levels (Figure 3e right). Similar results were seen in NCI-H292 parental and NCI-H292/TR cells (Figures 3d and f). Collectively, these results indicated that MUC1 was responsible for ABCB1 induction by PTX.
Inhibition of ABCB1 attenuates chemoresistance
To determine whether ABCB1 was responsible for MUC1-dependent resistance to PTX, we restored the expression of ABCB1 in MUC1-deficient cells. Expression of ABCB1 was indeed associated with a significant increase in resistance to PTX (Figures 4a and b). Conversely silencing ABCB1 in HeLa229/TR cells resulted in a marked increase in sensitivity to PTX (Figures 4c and d). To corroborate the results obtained with the genetic approach, we used a pharmacological method by using two specific ABCB1 inhibitors verapamil and zosuquidar. Treatment of HeLa229 with the ABCB1 inhibitors also diminished the resistance to PTX (Supplementary Figures S4A and S4B). In agreement with these observations, ABCB1 inhibitors conferred sensitivity of both HeLa229/TR (Figures 4e and f) and NCI-H292/TR (Figures 4g and h) cells to PTX. Interestingly, silencing MUC1 expression also sensitized cells to other substrates of ABCB1, including doxorubicin, vincristine, etoposide and epirubicin (Supplementary Figures S4C-S4F). These results collectively showed that ABCB1 was responsible for MUC1-induced chemoresistance in parental and drug resistance cells.
MUC1 enhances nuclear translocation of EGFR and elevates ABCB1
We next investigated how MUC1 upregulated ABCB1. Given the association of MUC1 with the EGFR pathway35, 36 and the latter in regulation of ABCB1 expression,37, 38 we asked whether MUC1-induced ABCB1 expression was mediated by the EGFR pathway. We tested this hypothesis by treating cells with PTX in combination with erlotinib, an inhibitor of EGFR. Erlotinib effectively blocked EGFR phosphorylation and PTX-induced ABCB1 expression in HeLa229/shCTL cells (Figure 5a). In line with these results, blocking EGFR phosphorylation with erlotinib in both HeLa229/TR cells and NCI-H292/TR cells was associated with a marked reduction of the abundance of MUC1 as well as ABCB1 (Figures 5b and c). Quantification of the transcript level revealed that erlotinib impeded PTX-induced increase of ABCB1 mRNA in HeLa229 cells (Supplementary Figure S5A) and HeLa229/TR cells (Figure 5d), as well as NCI-H292/TR cells (Figure 5e). In addition, silencing of EGFR in HeLa229/TR cells also diminished ABCB1 (Supplementary Figure S5B) and chemoresistance (Supplementary Figure S5C). These results suggested that although EGFR alone had little effect, it modulated MUC1-induced ABCB1 expression. In support of the importance of EGFR/MUC1 in transcriptional regulation of ABCB1, erlotinib significantly sensitized HeLa229 (Figure 5f) and HeLa229/TR (Figure 5g) to PTX-induced growth inhibition, as well as NCI-H292/TR cells (Figure 5h). Altogether, the results showed that MUC1/ EGFR was involved in PTX-induced ABCB1 enrichment.
To understand how EGFR could affect MUC1-mediated ABCB1 regulation, we examined whether EGFR may interact with MUC1 by first performing a cell fractionation experiment. The result revealed that treatment with PTX was associated with an increase of both MUC1 and EGFR in the nucleus but with less change in the cytoplasm (Supplementary Figure S5D). We conducted immunofluorescence staining to confirm the result from cell fractionation experiments. Indeed, PTX treatment not only induced increased nuclear distribution but also colocalization of MUC1 and EGFR (Figure 6a). Of note, PTX-induced nuclear colocalization of MUC1 and EGFR was efficiently blocked by inhibition of EGFR (Figure 6a). The inhibitory effect of erlotinib on PTX-induced MUC1 and EGFR nuclear distribution was further confirmed in cell fractionation assay (Figure 6b). Immunoprecipitation revealed that binding of MUC1 and phosphorylated EGFR was considerably increased by PTX treatment and effectively blocked by erlotinib (Supplementary Figure S5E). Given that multiple lines of studies have implicated MUC126, 28, 39 and EGFR40 in transcription regulation as coactivators, we next investigated whether PTX-induced interaction between MUC1 and EGFR in the nucleus could contribute to transcriptional of ABCB1. To this end, ChIP assay was carried out in both HeLa229 and HeLa229/TR cells. The result showed that MUC1 mainly bound to three regions of the ABCB1 promoter: −400 to +200, −1150 to −1400 and −1650 to −1900, which are within the same sequences as the EGFR-binding sites (Supplementary Figures S5F and S5G). H3K27Ac-binging site indicates a transcriptional activating region. Consistence with the previous results, treatment with erlotinib significantly reduced the binding of MUC1 and EGFR onto the ABCB1 promoter, in particular within the region of +1 to +200 (Figure 6c). To confirm the transcriptional regulation of ABCB1 by MUC1/EGFR, we performed luciferase assay by transfecting HeLa229/shMUC1-B cells with MUC1-HA plasmid together with ABCB1 promoter-driven luciferase reporters. MUC1 expression stimulated luciferase activity, which was further enhanced by PTX treatment. Consistence with the finding in ChIP experiment, this effect was mediated specifically in the region of −200 to +200bp (Figure 6d). In addition, silence of MUC1 or EGFR attenuated the ABCB1 transcription further revealing an important role of MUC1/EGFR in ABCB1 regulation (Figure 6e). These data collectively suggested that MUC1 activated EGFR and induced transcription of ABCB1 in HeLa229 and NCI-H292 cells.
Co-administration of MUC1–EGFR–ABCB1 axis and PTX prevents tumor relapse
To investigate the contribution of MUC1 to chemoresistance in vivo, we generated xenograft mouse models. HeLa229/shCTL derived tumors were initially sensitive to PTX treatment, as reflected by ceased growth. However, the tumors resumed growth at day 21 after conclusion of PTX treatment (Figure 7a), consistent with acquired PTX resistance. A critical role of MUC1 in this chemoresistance was evidenced by the finding that MUC1 depletion was not only associated with reduction of tumor growth, but also with a complete prevention of tumor relapse after ending PTX treatment (Figures 7a and b). In agreement with our in vitro data, PTX treatment induced elevated expression levels of MUC1, ABCB1, and marked increase of EGFR nuclear localization in tumor tissues (Figure 7c). Of note were that these effects were only evident in HeLa229/shCTL tumor but not in HeLa229/shMUC1 tumor (Figure 7c), supporting a MUC1 dependency. TUNEL staining revealed that PTX treatment induced more apoptosis in HeLa229/shMUC1 tumors than that in HeLa229/shCTL tumors (Figure 7d). To examine the contribution of the MUC1/EGFR–ABCB1 axis to tumor chemoresistance, we treated the HeLa229/shCTL tumor-bearing mice with PTX in combination with verapamil or erlotinib. Similar to the sensitizing effect of shMUC1, verapamil or erlotinib substantially augmented PTX-induced inhibition of tumor growth (Figure 7e,Supplementary Figures S6A and S6B). Of note was that there was little difference in body weights of mice within groups of drug alone and combination treatment (Supplementary Figure S6C), indicating that the treatments did not cause significant toxicity. These data collectively support a critical role of the MUC1/EGFR–ABCB1 axis in acquired chemoresistance of HeLa229 cells, and moreover that targeting this axis can effectively overcome the chemoresistance.
Discussion
Cervical cancer is the second most common malignancy that affects women worldwide with high mortality.41 PMC is a rare histologic type of lung malignancies.42 PTX is an important drug for first-line treatment of both cancers. Functional characterization of MUC1 in these two cancers demonstrates that MUC1 mediates the development of acquired chemoresistance of cancer cells. Treatment of cancer cells with chemotherapy drugs induces the expression of MUC1, which stimulates the activation and nuclear distribution of EGFR. Together, EGFR and MUC1 transcriptionally upregulate ABCB1 contributing to acquirement of chemoresistance. In support of a critical role for the MUC1/EGFR–ABCB1 axis in chemoresistance, targeted inhibition of EGFR by shRNA and erlotinib sensitizes cancer cells to chemotherapy in vitro and in vivo. Our work not only uncovers novel insight into acquired chemoresistance in cervical cancer and PMC, but also carries important therapeutic implication.
The overexpression of MUC1 in cancers and its association with poor prognosis in cancer patients led us to investigate a potential role of this oncoprotein in cancer progression.19, 20 Using a combination of loss- and gain-of function approach, we provided both in vitro and in vivo evidence directly linking MUC1 to acquired chemoresistance. MUC1 was induced in cancer cells upon treatment with chemotherapeutic drugs. Of particular interest was the finding that the expression of MUC1 was considerably upregulated in cancer cells that had acquired chemoresistance following long-term PTX treatment. In line with our observations, MUC1 was previously reported to associate with therapy resistance in several other cancer types, such as breast cancer31 and pancreatic cancer.32 Of note is that the MUC1 expression was relatively low in untreated or naïve tumors but significantly induced by PTX, pro-longed treatment in particular. Our results indicate that PTX treatment upregulates MUC1 transcriptionally as well as post-translationally. MUC1 promoter could be regulated by epigenetic mechanism,43 or by cis-acting elements, such as Sp1, AP-1-4, NF-1 and NF-κB.44 Proinflammatory cytokines were also reported to elevate MUC1.45 PTX could increase transcription of MUC1 by active NF-κB46 or proinflammatory cytokines.47 Contrast with transcriptional regulation of MUC1, much less is known about post-translationally regulation of MUC1. Further studies will be necessary to investigate how chemotherapeutic drugs post-translationally upregulate MUC1 expression.
MUC1 has been implicated in modulating cellular sensitivity to therapy. It was previously reported that MUC1 conferred pancreatic cancer cells chemoresistance by upregulating MRP1.32 We identified ABCB1 as an important factor mediating MUC1-dependent chemoresistance in cervical cancer and PMC. ABC family proteins are often involved in multidrug resistance in cancer.34 Among the nine PTX-related ABCs, we found ABCB1 protein being the only one that was selectively induced by MUC1, although mRNA levels of ABCC1 and ABCC5 were also elevated by MUC1. Indeed, inhibition of ABCB1 with complementary pharmacological and genetic approaches substantially diminished chemoresistance of cancer cells. The results not only uncover a novel mechanism of MUC1-induced chemoresistance but also implicate ABCB1 as a potential therapeutic target in cancer cells.
To elucidate the mechanism how MUC1 regulates ABCB1, we directed our attention to the EGFR pathway because the latter is not only implicated in ABCB1 regulation37, 38 but also associated with MUC1.35, 36 Recent studies showed that EGFR was involved in chemoresistance in many cancers via regulating ABCB1 and ABCG2.37, 38, 48, 49 A dynamic interaction between MUC1-C and EGFR has been reported under various contexts with a general trend of mutual functional augmentation. MUC1 promotes EGFR-dependent activation of the PI3K-AKT pathway,22, 50 and regulates localization of EGFR to the nucleus,36 as well as stimulates EGFR expression by binding to the EGFR promoter. Consistent with published work, we found that increased MUC1 expression in cervical cancer cells was associated with increased phosphorylation and total level of EGFR (Figures 5a and 6b). PTX treatment stimulated activity and nuclear localization of both MUC1 and EGFR. Importantly, suppression of EGFR by inhibitor considerably repressed PTX-induced ABCB1 expression, and reversed MUC1-mediated resistance to PTX (Figure 5f). In addition, silencing of either MUC1 or EGFR in HeLa229/TR cells results withdrew ABCB1 and chemoresistance (Figure 3e,Supplementary Figures S2B, S5B and S5C). The MUC1/EGFR complex formation was further confirmed by co-IP assay (Supplementary Figure S5E). These data support a model of MUC1/EGFR–ABCB1 axis in MUC1-induced chemoresistance. Of note is that erlotinib also markedly diminished PTX-induced nuclear distribution of MUC1 and EGFR, which would impede their transcriptional activity. Indeed, ChIP assay revealed that treatment with erlotinib substantially decreased the binding of MUC1 and EGFR to the ABCB1 promoter, providing important molecular insight into MUC1-mediated chemoresistance. The most enrichment of luciferase activity was found in region of −200 to +200, which included binding sites for many important transcription factors, such as STAT3 (+64 to +72), FOXO3a (−181 to +68), p53 (−49 to −40; −72 to −62), InvMED (−106 to −100), NFR1/2 (−123 to −115), C/EBP (−147 to −135), NF-κB (−167 to −158), AP-1 (−122 to −116) and β-catenin (−228 to +31). The identification of the binding site for MUC1/EGFR in ABCB1 promoter is instrumental for elucidation of the mechanism by which that MUC1/EGFR regulates transcriptional activation of ABCB1.51
We demonstrated that combined use of EGFR inhibitors with ABCB1 substrate may represent a promising strategy to reverse ABCB1-mediated chemoresistance. Several small molecular tyrosine kinase inhibitors (TKIs), such as gefitinib,52, 53 erlotinib54, 55 and lapatinib,56 have been approved by the FDA for the treatment of NSCLC where EGFR is often activated via amplification or mutation.57 Interestingly, it was reported that acquired resistance to PTX in ovarian carcinoma cells is also associated with enhanced sensitivity to HER1/EGFR inhibitors, which correlates with increased HER1/EGFR expression.58 In line with this finding, we found that EGFR was initially undetectable in cervical tumor but induced by PTX treatment (Figure 7c), which was accompanied with increased MUC1/ABCB1 expression and therapeutic resistance. Our data suggest a close correlation between chemoresistance and EGFR activation in cervical tumor and PMC. Consistent with this notion is our data showing that EGFR was activated by MUC1 in PTX-resistant cancer cells and more importantly, MUC1 inhibition resulted in diminished activity of EGFR and reduced expression of ABCB1 leading to reversal of PTX resistance. In our cervical cancer xenograft mouse model, co-administration of PTX with EGFR inhibitor erlotinib significantly prevented the tumor growth and relapse, which was associated with reduced expression of MUC1 and ABCB1, and diminished activity of EGFR. Our data implicate that EGFR inhibitors in addition to combination with PTX can be used to overcome acquired chemotherapy resistance in MUC1-positive cancer.
Many pathways were reported to regulate ABCB1 expression. For instance, the inhibition of p38/MAPK reduced the activator protein-1 (AP-1) activity and ABCB1.59 Activation of JNK/c-Jun/AP-1 reduces ABCB1 mRNA expression.60, 61 Our data showed that EGFR inhibitors did not completely inhibit interaction of MUC1 and ABCB1 promoter, suggesting the possible effect of MUC1 on other pathway in addition to EGFR.
Our findings also have implications in treating other cancers, as MUC1 has been shown to be upregulated in many PTX-resistant tumors including ovarian cancer and gastric cancer (Supplementary Figure S7) based on ONCOMINE database. Further studies will be needed to investigate whether our findings in this study can be translated to other cancers in which MUC1 and ABCB1 are positive.
Materials and methods
Cell culture
HeLa229, HEK293T and NCI-H292 were provided by Cell Bank, Type Culture Collection, Chinese Academy of Sciences (Shanghai, China) and Fu Heng Biology Company (Shanghai, China), respectively. HeLa229 and NCI-H292 cells were cultured in RPMI1640 (Corning, NY, USA) with 10% fetal bovine serum (Gibco, Grand Island, NY, USA), and HEK293T was cultured in DMEM with 10% fetal bovine serum (Gibco) supplemented with 100 U/ml penicillin and 100 μg/ml streptomycin, and maintained in humidified atmosphere of 5% CO2 at 37 °C. All cell lines are routinely tested and free of mycoplasma.
Generation of PTX-resistant cell lines
To generate PTX-resistant HeLa229/TR cells, HeLa229 cells were exposed gradually to 5, 10, 15, 20 and 25 nM PTX, and each treatment lasted 9 days. PTX-resistant NCI-H292/TR cells were generated by being exposed gradually to 2.5, 5, 10 nM PTX.
Plasmids and transfection
HeLa229/shCTL or HeLa229/shMUC1-A/B cells were accomplished by transfecting HeLa229 cells with pRNAU6.1-shCTL or pRNAU6.1-shMUC1-A/B using X-treme GENE HP DNA Transfection Reagent (Roche Applied Science, Basel, Switzerland) and selected by 500 μg/ml G418. Two target sequences for MUC1 are shown as following: shMUC1-A: 5′-AAGGTACCATCAATGTCCACG-3′, and shMUC1-B: 5′-AAGTTCAGTGCCCAGCTCTAC-3′. The control shRNA (shCTL) sequence is 5′-CGCTTACCGATTCAGAATGG-3′. PGIPZ-puromycin lentiviral plasmids were from the Thermo Scientific Open Biosystems GIPZ Lentiviral shRNAmir Library (Thermo Fisher Scientific, Waltham, MA, USA). The target sequences were as following: shMUC1-1: 5′-CCAGCACCGACTACTACCA-3′ shMUC1-2: 5′-GAAATGTTTTTGCAGATTT-3′ shABCB1-1: 5′-CAGATAATATTAAGGGAAA-3′ shABCB1-2: 5′-AGATGATGTCTCCAAGATT-3′ shEGFR-1: 5′- AGGAACTGGATATTCTGAA-3′ ShEGFR-2: 5′-AGATCAGAAGACTACAAAA-3′. Nonsense control sequence is 5′-CTCGCTTGGGCGAGAGTAA-3′. The shRNA plasmids and packaging plasmids (PM2G and PSPAX2) were co-transfected into HEK293T cells. The viral supernatants were collected 48 h after transfection. The HeLa229/TR and NCI-H292/TR cells were infected with shMUC1 (shMUC1-1/shMUC1-2), shABCB1 (shABCB1-1/shABCB1-2), shEGFR (shEGFR-1/shEGFR-2) and shCTL lentivirus with medium containing 1 μg/ml polybrene (Santa Cruz Biotechnology, Santa Cruz, CA, USA). After 48 h, cells were selected with 3 μg/ml puromycin (HeLa229/TR) or 1.5 μg/ml puromycin (NCI-H292/TR). To construct MUC1-expressing plasmid, the full length of MUC1 with HA tag at C-terminal was cloned into pIRESpuro2 vector. To construct shMUC1-B-resistant MUC1-HA-expressing plasmid pIRESpuro2-MUC1-HA (MUC1-HA), the target sequence of shMUC1-B was synonymous mutated from 5′-aagttcagtgcccagctctac-3′ to 5′-aagCtcCgtgccTagctcGac-3′. The pHa-MDRwt expression plasmid (ABCB1 plasmid) was a gift from Dr. Michael Gottesman (Addgene, Cambridge, MA, USA; plasmid).
Transient transfections were performed with Lipofectamine 2000 reagent (Invitrogen, Carlsbad, CA, USA) or X-treme GENE HP DNA Transfection Reagent (Roche Applied Science, Basel, Switzerland) according to the manufacturer’s instructions.
Cell proliferation/viability assay and IC50 values
Cell viability was determined using the cell counting kit 8 (CCK8) according to the manufacturer’s protocol (Dojindo Molecular Technologies, Kumamoto, Japan). Briefly, 6000–10000 cells per well (for drug viability assay) were seeded in 96-well plates, cultured overnight and then treated with different drugs. After relevant treatment, CCK8 was added and incubated for additional 2 h, then the absorbance at wavelength of 450 nm was measured by Synergy H4 Hybred Reader (BioTek Instruments, Winooski, VT, USA). Relative growth inhibition and the half-maximal inhibitory concentration (IC50) values were calculated by nonlinear regression analysis using the GraphPad Prism 6.0 software (GraphPad Software, Inc. La Jolla, CA, USA). Each experiment was repeated three times with triple samples.
Drugs and antibodies
The following drugs and antibodies were used in our experiments: PTX, vincristine, doxorubicin and verapamil, cycloheximide, etoposide (Sigma-Aldrich, St. Louis, MO, USA), zosuquidar, erlotinib and AG-1478 (Selleck Chemicals, Houston, TX, USA), anti-MUC1-C antibody (Thermo Scientific, Hudson, NH, USA), anti-MUC1-N antibody,17 anti-HA-tag, anti-ABCB1, anti-phospho-EGFR 1068 antibodies (Cell Signaling Technology, Danvers, MA, USA), anti-ABCBG2 antibody (GeneTex, Irvine, CA, USA), anti-ABCC1 antibody (Bioworld Technology, Inc., Louis Park, MN, USA), anti-ABCC2 and anti-EGFR antibodies (Proteintech Group, Chicago, IL, USA), anti-ABCC3 and anti-ABCC5 (Cusabio Biotech, Wuhan, China), anti-Lamin B and anti-IκB-α antibodies (Santa Cruz Biotechnology), anti-histone H3 (acetyl K27) antibody (Abcam, Cambridge, MA, USA), horseradish peroxidase (HRP)-linked secondary antibody (Cell Signaling Technology) and anti-β-actin antibody (Merck Millipore Billerica, MA, USA).
Western blot
Cells were collected by trypsinization and lysated in NETN 150 lysis buffer (0.5% NP-40, 20 mM Tris (pH 8.0), 150 mM NaCl, 6 mM EDTA). The proteins were quantified by Bradford. Twenty microgram protein was separated by SDS-PAGE, and transferred to the nitrocellulose membrane (Axygen, Tewksbury, MA, USA). After blocking in 5% non-fat milk for 1 h at room temperature, the membrane was incubated with primary antibodies overnight at 4 °C, followed by HRP-linked secondary antibody. ImmobilonTM Western Chemiluminescent HRP Substrate kit (Millipore Corporation, Billerica, MA, USA) was used for detection.
Quantitative real-time PCR (RT-qPCR)
Total RNA was extracted using TriPure Isolation Reagent according to the manufacturer’s protocol (Roche). Complementary DNA was synthesized using the M-MLV Reverse Transcriptase synthesis kit (Promega, Madison, WI, USA). RT-qPCR was carried out with Power SYBR Green PCR Master mix kit according to the manufacturer’s instructions (Applied Biosystems, Warrington, UK). Amplifications were performed in ABI PRISM 7500 Sequence Detection System (Applied Biosystems). Relative transcript quantities were calculated using the ΔΔCt method with β-actin as the endogenous reference gene. Each result was repeated three times. The primers are from PrimerBank.
Primer sequences for RT-qPCR:
Nuclear and cytoplasmic extraction
The nuclear and cytoplasmic proteins were purified by using NE-PER Nuclear and Cytoplasmic Extraction Reagents (Pierce Biotechnology, Inc., Rockford, IL, USA) according to the manufacturer's instructions. The nuclear and cytoplasmic proteins were then quantified by Bradford, and further analyzed by western blot.
Immunofluorescence staining
Cultured cells were rinsed with room temperature PBS once, and fixed with cold 4% formaldehyde for 30 min, and wash with PBS for three times. Cells were permeabilized with cold methanol for 20 min and incubated with the primary antibodies overnight at 4 °C after 5% BSA blocking. The cells were incubated with fluorescent secondary antibodies (Jackson ImmunoResearch, West Grove, PA, USA) in 5% BSA for 1 h at 37 °C. Nuclei were stained with DAPI (Vector Laboratories, Burlingame, CA, USA). A confocal microscope (Nikon, Tokyo, Japan) was used to observe all stained slices.
Chromatin immunoprecipitation
HeLa229 and HeLa229/TR cells were seeded on 150 mm cell culture dishes. Cells were washed with room temperature PBS and fixed with 1% formaldehyde in PBS for 10 min at 37 °C. Then, cells were rinsed with ice cold PBS and harvested by spin. The cell pellets were resuspended in lysis buffer (1% SDS, 5 mM EDTA, 50 mM Tris.HCl (pH 8.0) with protease inhibitor), and sonicated. Perform immunoclearing by incubating chromatin with sheared salmon sperm DNA, pre-immune serum and protein A sepharose beads for 2 h at 4 °C. The supernatant was subject to immunoprecipitation with MUC1, EGFR or histone H3 (acetyl K27) antibodies for 6 h at 4 °C, followed by addition of protein A sepharose beads, salmon sperm DNA for 1 h. Sepharose beads were harvested and washed sequentially in TSEI (0.1% SDS, 1% Triton X-100, 2 mM EDTA, 20 mM Tris.HCl (pH 8.0), 150 mM NaCl), TSEII (0.1% SDS 1% Triton X-100, 2 mM EDTA, 20 mM Tris.HCl (pH 8.0), 500 mM NaCl), buffer III (0.25 M LiCl, 1% NP-40, 1% deoxycholate, 1 mM EDTA, 10 mM Tris.HCl (pH 8.0)) and TE buffer. DNA was eluted from the beads with elution buffer (1% SDS, 0.1 M NaHCO3). The elution was heated at 65 °C overnight to reverse the formaldehyde cross-link, and purified with the QIAquick PCR purification kit (QIAGEN GmbH, Hilden, Germany).
Negative primers located at 167-kb upstream of ABCB1. Primers for ChIP:
Co-immunoprecipitation assay
HeLa229 and HeLa229/TR cells were lysed in NETN 150 lysis buffer with 1 mM PMSF and 20 mM phosphatase inhibitor cocktail tablets (Roche Diagnostics GmbH, Mannheim, Germany). Cell lysate was precleared with 30 μl protein A/G plus agarose (Santa Cruz Biotechnology) at 4 °C for 2 h. The supernatant was incubated with MUC1-C-terminal antibody and hamster IgG antibody (Santa Cruz Biotechnology) overnight at 4 °C with rotation. In all, 20 μl protein A/G plus agarose was added to cell lysate and incubated for 2 h at 4 °C with rotation. The immunoprecipitates were collected by centrifugation and washed with NETN 150 buffer for three times.
Luciferase assay
HeLa229 cells were transfected with luciferase reporter plasmids pGL3-MUC1-promoter (500 ng) or pGL3-ABCB1-promoter (500 ng) together with pGL3-SV40-Renilla (10 ng). Thirty-six hours later, cells were collected and analyzed by the Dual-Luciferase Assay system (Promega) according to the manufacturer's instructions.
pGL3-MUC1-promoter luciferase reporter plasmid was generously provided by Dr. Donald Kufe at Dana-Farber Cancer Institute Harvard Medical School Boston, MA, USA.
The human ABCB1 promoter (-2500 to +700) was amplified with primers (up: 5′-GGGGTACCGCAAGGGGACCAGGTAGGTTTCATC-3′, down: 5′-CTAGCTAGCCTAGTTACCTTTTATTGT-3′), the human ABCB1 promoter (−200 to +200) was amplified with primers (up: 5′-CTAGCTAGCAGGAAATCTGAAAGCCTGAC-3′, down: 5′-GGGGTACCCCCTTTCTAGAGAGGTGCA-3′), and then cloned into pGL3-basic vector (Promega) to construct pGL3-ABCB1-promoter (−2500 to +700) luciferase reporter and pGL3-ABCB1-promoter (−200 to +200) luciferase reporter.
TUNEL assay
To detect apoptotic cells in tumor tissue, the samples were fixed in 4% paraformaldehyde immediately, and tumor tissue sections were stained by the TUNEL kit (Promega) according to the manufacturer's instructions. Fluorescence signals were captured on a Confocal microscope (Nikon).
Histological and immunohistochemical staining (IHC)
Tumor tissues were fixed in 4% paraformaldehyde and then dehydrated before embedding in paraffin. In all, 6 μm tissue were sliced and stained according to the standard procedure with eosin and hematoxylin. Paraffin-embedded tumors were de-paraffinized with xylene for 5 min twice, and then treated with gradient ethanol for 3 min for each time. The tissue sections were then heated to 92–98 °C in 10 mM citrate buffer (pH 6.0) for 35 min for antigen retrieval. To increase tissue permeability, tissue sections were treated in PBST (0.2% Triton X-100) for 10 min. Tissue sections were treated with 3% hydrogen peroxidase in methyl alcohol for 10 min and then incubated with blocking serum for 1 h at room temperature. Tissue sections were incubated with primary antibody at 4 °C overnight. IHC staining was performed with ABCB1 and MUC1-C, EGFR antibodies. The staining procedure followed the manufacturer’s instructions for the ABC staining system (Santa Cruz Biotechnology).
Animal experiments
All animals were handled according to the Guide for the Care and Use of Laboratory Animals’ and the Principles for the Utilization and Care of Vertebrate Animals’. All animal experiments consulted the ARRIVE guidelines for animal.62 Research was approved by the Institutional Animal Care and Use Committee at Shanghai Jiaotong University School of Medicine. Investigators were blinded to the group allocation.
Tumor cells were injected subcutaneously in ventral flanks of 6-week-old female BALB/c nude mice. When the tumors reached approximately 4 mm × 4 mm, tumor-bearing mice were randomly assigned (n=6 per group) and treated with different drugs.
Mice injected with 2.5 × 106 of HeLa229/shCTL or HeLa229/shMUC1 cells were assigned blindly into two groups for drug resistance experiments with six mice for each group: mice in group 1 were treated with PBS as control, and mice in group 2 were treated with PTX (40 mg/kg). PTX (Taxol; Bristol-Myers Squibb, Princeton, NJ, USA) was appropriately diluted in PBS before treatments. Drugs were injected intraperitoneally every 3 days. The total treatment period was 15 days, 30 days after the final administration, the mice were killed.
Mice injected with 2.5 × 106 HeLa229/shCTL were blindly assigned into six groups for combination drug resistance experiments with six mice for each group: groups 1 and group 2 were treated as above, group 3 were treated with verapamil (20 mg/kg), group 4 were treated with verapamil and PTX, group 5 were treated with erlotinib (50 mg/kg) and group 6 were treated with erlotinib and PTX. Mice injected with 2.5 × 106 HeLa229/shMUC1 were assigned into two groups as above with six mice for each group. Erlotinib and verapamil (Selleck Chemicals) were prepared according to the manufacturer's instructions, then diluted in PBS. Drugs were injected intraperitoneally every 3 days. Tumor growth was monitored by caliper rule every 3 days, and the total treatment period was 15 days for combination drug treatment. Three weeks after the final administration, the mice were killed. The volume was calculated according to the formula: V=length × width2/2.
Statistical analysis
All statistical analyses were performed by GraphPad Prism 6 (GraphPad Software, La Jolla, CA, USA). Each result is represented as the mean±S.D. of three independent experiments(n=3) and two-sided student’s t-test was performed to evaluate the differences between linked groups, P-values <0.05 were considered as statistically significant. *P<0.05, **P<0.01, ***P<0.001 and ****P<0.0001.
Acknowledgments
This work was supported by the National Natural Science Foundation of China (grant numbers 81272262) to LH, the National Basic Research Program of China (973 Program, 2015CB910403 to GC and 2012CB967003 to QL) and the National Natural Science Foundation of China (grant numbers 81572692) to KZ. We would like to appreciate Dr. Donald Kufe for providing us MUC1 Luciferase promoter. We also would like to thank Dr. Jinke Cheng, Dr. Jiong Deng and Dr. Yujie Tang for constructive suggestions.
Footnotes
Supplementary Information accompanies this paper on Cell Death and Disease website (http://www.nature.com/cddis)
Publisher’s Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Edited by Y Shi
The authors declare no conflict of interest.
Supplementary Material
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