Table 5.
Regulatory non-coding RNAs associated with the novel hub genes identified in our study
| Novel hub genes | miRNAs associated with novel hub genes | lncRNAs associated with the miRNAs |
|---|---|---|
| MAGED1 | hsa-miR-3942–5p | |
| hsa-miR-4703-5p | ||
| hsa-miR-3157-5p | ||
| hsa-miR-3188 | ||
| hsa-miR-4649-3p | ||
| hsa-miR-3200-5p | ||
| hsa-miR-1252 | ||
| hsa-miR-4777-5p | ||
| hsa-miR-760 | ||
| hsa-miR-4474-3p | ||
| hsa-miR-4709-5p | ||
| hsa-miR-421 | n339122 | |
| hsa-miR-505 | ||
| hsa-miR-4704-3p | ||
| hsa-miR-4252 | ||
| hsa-miR-3120-3p | ||
| hsa-miR-3148 | ||
| hsa-miR-4457 | ||
| hsa-miR-4801 | ||
| hsa-miR-4731-3p | ||
| hsa-miR-548o | ||
| hsa-miR-4762-3p | ||
| hsa-miR-450b-5p | ||
| hsa-miR-1323 | ||
| AP3B2 | hsa-miR-221 | n339827 |
| hsa-miR-222 | ||
| STXBP1 | hsa-miR-9 | |
| AF1Q | hsa-let-7b | n339682, XIST, n410735, n410470, n408209, n410533, n410111, n411752, n381104, n333512, n345604, RP11–139H15.1, n407908 |
| hsa-miR-1-2 | ||
| hsa-miR-1-1 | ||
| hsa-miR-155 | ||
| hsa-miR-16-1 | ||
| hsa-miR-16-2 | ||
| hsa-miR-30a | n336002, n409199, RP11-46 M12.1 | |
| hsa-miR-30b | ||
| hsa-miR-30c-1 | ||
| hsa-miR-30c-2 | ||
| hsa-miR-30d | ||
| hsa-miR-30e | n340869, n409200 | |
| hsa-miR-29a | ||
| hsa-miR-29c | ||
| hsa-miR-29b | n410507, n341043 | |
| GASP | hsa-miR-873 | |
| hsa-miR-4711-5p | ||
| hsa-miR-4642 | ||
| hsa-miR-3065-5p | ||
| hsa-miR-3671 | ||
| hsa-miR-4277 | ||
| hsa-miR-888 | ||
| hsa-miR-4727-5p | ||
| C14ORF78 | hsa-miR-195 | |
| hsa-miR-16 | n340911, n409656, n409286, n324249, n409199, n410507, n409266, n410476, n407230, n340530, n407036 | |
| hsa-miR-424 | RP11-690G19.3, n410128, XIST, n342875, n381422, n406658, n340847, n338391, n407096, n342697, n382508, n407461, n339766 | |
| hsa-miR-15a | n342249, n409656, n407055, n410632, n408096, n381271, n410476, n342731, n410126, n406625, n335593, n341454, n409264, n409159, n408379, n337715, n338629, n409761 | |
| hsa-miR-497 | ||
| hsa-miR-15b | n410890, n410438, n338345 | |
| MAN1C1 | hsa-miR-93-5p | n341008, n410211, n408146 |
| hsa-miR-130b-3p | n406921, n337752, n382094, n342786, n337985, n333016, n410686, n410036, n340556, n406580, n385717, n324749, n333275, n340852 | |
| hsa-miR-206 | ||
| hsa-miR-1 | ||
| hsa-miR-613 | ||
| HNRPC | hsa-miR-455-5p |
Already known PD-specific miRNAs are shown in bold
Four lncRNAs regulating both PD-specific miRNAs and miRNAs not previously known in PD are shown in bold (please refer Table 6 for more details)