Table 2.

Sequencing Success Rates Among the First PANGEA-HIV Consensus Sequences

	Average proportion of nonmissing nucleotide characters per sequence (relative to corresponding de novo reference sequence)
	Length in HXB2 (nt)	Africa Health Research Institute Resistance Cohort (%)	Mochudi Prevention Project (%)	Rakai Community Cohort Study (%)	MRC/UVRI Uganda (%)
Partial genome
gag	1,503	99	91	82	85
pol	2,844	100	81	37	68
env	2,571	100	80	37	66
gag (p17)-nef	8,628	99	82	46	71
Genomic region between primersa
gag start-2F	241	98	88	78	81
2F-1R	879	100	93	84	89
1R-3F	2,375	100	79	33	66
3F-2R	231	100	91	48	76
2R-4F	908	99	81	40	68
4F-3R	1,844	100	84	42	71
3R-nef end	1,048	99	71	30	59

^aSee Figure 1 for location of the four forward and reverse primer sets.