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. 2017 Sep 13;12(9):e0184675. doi: 10.1371/journal.pone.0184675

Table 1. General characteristics of the studies.

Author and year of publication Study region Study period Design of study TB annual incidence rate per 100 000 inhabitants Study duration (months) Number of genotyped subjects Sampling fraction (%) DM diagnosis based on: Primary genotyping method Secondary genotyping method Application of secondary genotyping method Cluster definition Index case of the cluster Subjects in the cluster (%) Contact tracing
Hernández-Garduño et al., 2002 [55]. Greater Vancouver, British Columbia, Canada 1995–1999 Cohort 6.0** 50 793 100 Information obtained from the dataset of the TB division. RFLP-IS6110 Spoligotyping < 6 copies of IS6110 ≥ 2 strains with identical DNA (≥ 6 copies with RFLP, or < 6 copies with s poligotyping First diagnosed patient 17.3 Yes
Borrell et al., 2010 [21].* Barcelona, Spain 2003–2004 Cohort 21.6 24 115 67.4 Information obtained from TB program dataset of Barcelona and microbiology areas of hospitals and clinical centers. RFLP-IS6110 MIRU-12 loci < 6 copies of IS6110 or ≥6 bands with a different one ≥ 2 patients: (i) RFLP-IS6110 ≥ 6 bands in the same position; (ii) RFLP-IS6110 < 6 bands in the same position but with identical MIRU-12 loci; (iii) RFLP-IS6110 ≥ 6 bands that differ in 1 band but with identical MIRU-12 loci Subject with earliest onset of pulmonary symptoms or the one that started treatment first (asymptomatic) 32 Unknown
Jiménez-Corona et al., 2013 [56]. Orizaba, Veracruz, México 1995–2010 Cohort 21** 181 1013 80 Previous diagnosis from a physician or oral hypoglycemic medication or insulin administration or treatment RFLP-IS6110 Spoligotyping < 6 copies of IS6110 ≥ 2 two or more isolates from different patients identified within 12 months of each other and with six or more IS6110 bands in an identical pattern, or < 6 bands with identical IS6110 RFLP patterns and a spoligotype with the same spacer oligonucleotides Not specified 28.8 Unknown
Wang et al., 2014 [57]. Beijing, China 2009–2011 Cohort 73** 48 115 100 Clinical data obtained from the patient`s medical history MIRU-VNTR 24 loci (up to 28) Does not apply Does not apply ≥ 2 strains showing identical patterns MIRU-VNTR Not specified 17.4 Unknown
González et al., 2015 [54]. La Habana, Cuba 2009 Cohort 8.2 12 59 61 Clinical information obtained from the national statistics / epidemiology data base of the public health ministry of Cuba MIRU-VNTR 24 loci Does not apply Does not apply Strains with identical genetic pattern Not specified 54.2 Yes
Yang et al., 2015 [58]. China 2009–2012 Cohort 73** 36 1948 82 Clinical information obtained by professional interviewers with standardized questionnaire. MIRU-VNTR 29 loci Does not apply Does not apply Strains with identical genetic pattern First patient in the cluster 31 Yes

*We used only information from foreign patients;

** Annual rates were taken from World Bank [18]