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. 2017 Aug 23;3(2):vex022. doi: 10.1093/ve/vex022

Table 1.

Overview of the PPLVs identified in this study.

Illumina ID Accession number ENA number lane 1 ENA number lane 2 Lineage Sample source Sample type Source age Date of sample Genome length G + C content (%) Median depth of coveragea
Basavirus_16715_47 KX673228 ERR1301485 ERR1301574 Bv_7 Scotophilus kuhlii Fecal Unknown 10 Jun 2014 9,591 36.7 116
Basavirus_16715_47_2 KX673229 ERR1301485 ERR1301574 Bv_3 Scotophilus kuhlii Fecal Unknown 17 Jun 2014 9,585 32.1 42
Basavirus_16715_5 KX673230 ERR1301446 ERR1301535 Bv_6 Scotophilus kuhlii Fecal Unknown 12 Nov 2014 8,776 40.3 13
Basavirus_16715_61 KX673234 ERR1301499 ERR1301588 Bv_7 Scotophilus kuhlii Fecal Unknown 11 Jun 2014 9,566 36.6 129
Basavirus_16715_61_2 KX673235 ERR1301499 ERR1301588 Bv_6 Scotophilus kuhlii Fecal Unknown 11 Jun 2014 9,065 40.3 208
Basavirus_16715_69 KX673237 ERR1301507 ERR1301596 Bv_3 Scotophilus kuhlii Fecal Unknown 11 Jun 2014 9,528 32.2 21
Basavirus_16715_71 KX673238 ERR1301509 ERR1301598 Bv_7 Scotophilus kuhlii Fecal Unknown 11 Jun 2014 9,585 36.9 132
Basavirus_16715_71_2 KX673239 ERR1301509 ERR1301598 Bv_3 Scotophilus kuhlii Fecal Unknown 11 Jun 2014 9,483 32.1 29
Basavirus_16715_77 KX673240 ERR1301514 ERR1301603 Bv_1 Scotophilus kuhlii Fecal Unknown 10 Jun 2014 8,829 38.6 28
Basavirus_16715_84 KX673241 ERR1301519 ERR1301608 Bv_7 Scotophilus kuhlii Fecal Unknown 17 Jun 2014 9,391 36.9 48
Basavirus_16715_86 KX673242 ERR1301521 ERR1301610 Bv_3 Scotophilus kuhlii Fecal Unknown 17 Jun 2014 9,530 32.2 94
Basavirus_16845_64 KX673243 ERR1301829 ERR1301914 Bv_3 Scotophilus kuhlii Fecal Unknown 18 Sep 2014 9,537 32.2 160
Basavirus_16845_79 KX673244 ERR1301842 ERR1301927 Bv_2 Scotophilus kuhlii Fecal Unknown 18 Sep 2014 9,147 35.9 55
Basavirus_16845_94 KX673245 ERR1301855 ERR1301940 Bv_4 Scotophilus kuhlii Fecal Unknown 17 Sep 2014 8,262 48.2 27
Basavirus_17819_2 KX673289 ERR1302928 ERR1303004 Bv_5 Scotophilus kuhlii Fecal Unknown 12 Nov 2014 9,271 46.9 171
Basavirus_17819_8 KX673290 ERR1302934 ERR1303010 Bv_5 Scotophilus kuhlii Fecal Unknown 12 Nov 2014 9,240 47.1 274
Husavirus_16370_59 KX673221 ERR1301365 ERR1301415 Hv_1 Homo sapiens Fecal 7 years 2 Apr 2013 8,856 52.8 10
Husavirus_16915_89 KX673248 ERR1302009 ERR1302077 Hv_2 Homo sapiens Rectal swab 51 years 24 Mar 2013 8,576 50.8 17
Husavirus_19344_29 KX673274 ERS1725523 ERS1725523 Hv_1 Homo sapiens Fecal 59 years 2 Oct 2014 9,027 53 97
Posavirus_12087_40 KX673215 ERR473400 NA Pv_6 Sus domesticus Fecal 1 month 12 Mar 2012 11,036 43.8 32
Posavirus_12087_42 KX673216 ERR473402 NA Pv_6 Sus domesticus Fecal 1.5 months 14 Mar 2012 11,318 44.1 24
Posavirus_12144_61 KX673217 ERR477293 NA Pv_1 Sus domesticus Fecal 20 months 10 Apr 2012 9,729 35.8 135
Posavirus_14226_38 KX673218 ERR775480 NA Pv_3 Sus domesticus Fecal 15 months 6 Mar 2012 9,190 46.5 34
Posavirus_14226_39 KX673219 ERR775481 NA Pv_3 Sus domesticus Fecal 15 months 6 Mar 2012 9,071 46.4 25
Posavirus_14250_11 KX673220 ERR779984 NA Pv_5 Sus domesticus Fecal 2 months 21 Mar 2012 9,680 33.2 55
Posavirus_16915_3 KX673246 ERR1301944 ERR1302014 Pv_3 Sus domesticus Rectal swab 5 months 19 Mar 2013 9,296 46.8 45
Posavirus_16915_5 KX673247 ERR1301946 ERR1302016 Pv_3 Sus domesticus Rectal swab 5 months 19 Mar 2013 9,204 46.7 51
Posavirus_17489_2 KX673249 ERR1302404 ERR1302484 Pv_1 Sus domesticus Rectal swab 5 months 27 Mar 2013 9,835 36.5 127
Posavirus_17489_26 KX673250 ERR1302422 ERR1302502 Pv_1 Sus domesticus Rectal swab 5 months 3 Apr 2013 9,827 36.4 111
Posavirus_17489_27 KX673251 ERR1302423 ERR1302503 Pv_1 Sus domesticus Rectal swab 5 months 3 Apr 2013 9,773 36.5 16
Posavirus_17489_28 KX673252 ERR1302424 ERR1302504 Pv_1 Sus domesticus Rectal swab 5 months 3 Apr 2013 9,824 36.4 65
Posavirus_17489_30 KX673253 ERR1302426 ERR1302506 Pv_1 Sus domesticus Rectal swab 5 months 3 Apr 2013 9,672 36.4 193
Posavirus_17489_34 KX673254 ERR1302428 ERR1302508 Pv_5 Sus domesticus Rectal swab 5 months 3 Apr 2013 8,970 31.5 2184
Posavirus_17489_35 KX673255 ERR1302429 ERR1302509 Pv_5 Sus domesticus Rectal swab 5 months 3 Apr 2013 9,733 33.5 146
Posavirus_17489_36 KX673256 ERR1302430 ERR1302510 Pv_5 Sus domesticus Rectal swab 5 months 3 Apr 2013 9,729 33.5 842
Posavirus_17489_39 KX673257 ERS1725815 ERS1725815 Pv_5 Sus domesticus Rectal swab 5 months 3 Apr 2013 9,640 33.5 20
Posavirus_17489_4 KX673258 ERR1302405 ERR1302485 Pv_4 Sus domesticus Rectal swab 5 months 27 Mar 2013 8,970 31.5 29
Posavirus_17489_4_2 KX673259 ERR1302405 ERR1302485 Pv_1 Sus domesticus Rectal swab 5 months 27 Mar 2013 9,647 36.4 5
Posavirus_17489_40 KX673260 ERR1302433 ERR1302513 Pv_5 Sus domesticus Rectal swab 5 months 3 Apr 2013 9,650 33.5 70
Posavirus_17489_45 KX673261 ERR1302438 ERR1302518 Pv_5 Sus domesticus Rectal swab 5 months 4 Apr 2013 9,710 33.2 18
Posavirus_17489_47 KX673262 ERR1301975 ERR1302045 Pv_5 Sus domesticus Rectal swab 5 months 4 Apr 2013 9,783 33.2 24
Posavirus_17489_5 KX673263 ERR1302406 ERR1302486 Pv_4 Sus domesticus Rectal swab 5 months 27 Mar 2013 9,222 31.2 101
Posavirus_17489_50 KX673264 ERR1302440 ERR1302520 Pv_6 Sus domesticus Rectal swab 5 months 4 Apr 2013 11,094 44.6 45
Posavirus_17489_51 KX673265 ERR1302441 ERR1302521 Pv_4 Sus domesticus Rectal swab 2 years 4 Apr 2013 9,286 31.4 309
Posavirus_17489_60 KX673266 ERR1302450 ERR1302530 Pv_5 Sus domesticus Rectal swab 5 months 4 Apr 2013 9,859 33.4 39
Posavirus_17489_7 KX673267 ERR1302407 ERR1302487 Pv_1 Sus domesticus Rectal swab 5 months 27 Mar 2013 9,434 36.3 12
Posavirus_17489_86 KX673268 ERR1302473 ERR1302553 Pv_3 Sus domesticus Rectal swab 5 months 18 Apr 2013 9,283 46.7 237
Posavirus_17489_87 KX673269 ERR1302474 ERR1302554 Pv_3 Sus domesticus Rectal swab 5 months 18 Apr 2013 9,242 46.7 14
Posavirus_17489_90 KX673270 ERR1302477 ERR1302557 Pv_3 Sus domesticus Rectal swab 5 months 18 Apr 2013 8,469 46.6 14
Posavirus_17489_91 KX673271 ERR1302478 ERR1302558 Pv_3 Sus domesticus Rectal swab 5 months 18 Apr 2013 9,272 46.9 66
Posavirus_17489_95 KX673272 ERR1302481 ERR1302561 Pv_4 Sus domesticus Rectal swab 5 months 18 Apr 2013 9,216 30 153
Posavirus_17489_95_2 KX673273 ERR1302481 ERR1302561 Pv_5 Sus domesticus Rectal swab 5 months 18 Apr 2013 9,570 32.8 47
Posavirus_17668_10 KX673276 ERR1302758 ERR1302847 Pv_3 Sus domesticus Rectal swab 5 months 4 May 2013 9,309 46.6 154
Posavirus_17668_11 KX673277 ERR1302759 ERR1302848 Pv_1 Sus domesticus Rectal swab 5 months 4 May 2013 9,855 36.5 200
Posavirus_17668_11_2 KX673278 ERR1302759 ERR1302848 Pv_4 Sus domesticus Rectal swab 5 months 4 May 2013 9,066 31.2 18
Posavirus_17668_12 KX673279 ERR1302760 ERR1302849 Pv_3 Sus domesticus Rectal swab 5 months 4 May 2013 9,196 46 38
Posavirus_17668_13 KX673280 ERR1302761 ERR1302850 Pv_5 Sus domesticus Rectal swab 5 months 4 May 2013 9,666 33.4 31
Posavirus_17668_13_2 KX673281 ERR1302761 ERR1302850 Pv_3 Sus domesticus Rectal swab 5 months 4 May 2013 9,111 46.1 52
Posavirus_17668_33 KX673282 ERR1302780 ERR1302869 Pv_6 Sus domesticus Rectal swab 6 months 16 Oct 2013 11,171 43.5 78
Posavirus_17668_33_2 KX673283 ERR1302780 ERR1302869 Pv_3 Sus domesticus Rectal swab 6 months 16 Oct 2013 9,289 46.3 26
Posavirus_17668_33_3 KX673284 ERR1302780 ERR1302869 Pv_9 Sus domesticus Rectal swab 6 months 16 Oct 2013 9,498 47.1 77
Posavirus_17668_4 KX673275 ERR1302752 ERR1302841 Pv_5 Sus domesticus Rectal swab 5 months 4 May 2013 9,651 33.5 30
Posavirus_17668_47 KX673285 ERR1302794 ERR1302883 Pv_6 Sus domesticus Rectal swab 5 months 16 Oct 2013 11,295 45.1 99
Posavirus_17668_71 KX673286 ERR1302816 ERR1302905 Pv_7 Sus domesticus Rectal swab 6 months 17 Oct 2013 9,404 46.3 47
Posavirus_17668_83 KX673287 ERR1302827 ERR1302916 Pv_7 Sus domesticus Rectal swab 5 months 17 Oct 2013 9,366 46.9 46
Posavirus_17668_86 KX673288 ERR1302830 ERR1302919 Pv_7 Sus domesticus Rectal swab 5 months 17 Oct 2013 9,377 46.8 42
Rasavirus_16715_12 KX673222 ERR1301453 ERR1301542 Rv_2 Rattus argentiventer Fecal Unknown 12 Nov 2014 9,601 40.2 251
Rasavirus_16715_28 KX673223 ERR1301467 ERR1301556 Rv_2 Rattus argentiventer Fecal Unknown 14 Nov 2014 9,606 40.4 823
Rasavirus_16715_3 KX673224 ERR1301444 ERR1301533 Rv_2 Rattus argentiventer Fecal Unknown 12 Nov 2014 9,580 40.5 17
Rasavirus_16715_36 KX673225 ERR1301474 ERR1301563 Rv_1 Rattus argentiventer Fecal Unknown 14 Nov 2014 9,911 44.3 16058
Rasavirus_16715_4 KX673226 ERR1301445 ERR1301534 Rv_2 Rattus argentiventer Fecal Unknown 12 Nov 2014 9,619 40.3 14
Rasavirus_16715_43 KX673227 ERR1301481 ERR1301570 Rv_2 Rattus argentiventer Fecal Unknown 14 Nov 2014 9,562 40.4 24
Rasavirus_16715_52 KX673231 ERR1301490 ERR1301579 Rv_2 Rattus argentiventer Fecal Unknown 10 Jun 2014 8,678 40.8 27
Rasavirus_16715_52_2 KX673232 ERR1301490 ERR1301579 Rv_1 Rattus argentiventer Fecal Unknown 10 Jun 2014 8,497 44.7 50
Rasavirus_16715_57 KX673233 ERR1301495 ERR1301584 Rv_2 Rattus argentiventer Fecal Unknown 10 Jun 2014 9,599 40.3 9097
Rasavirus_16715_67 KX673236 ERR1301505 ERR1301594 Rv_2 Rattus argentiventer Fecal Unknown 11 Jun 2014 9,584 40.3 966
a

Median depth of coverage was determined by mapping all quality controlled reads to the final genome using Bowtie2 with –very-sensitive-local settings. Coverage was calculated as the number of reads mapped per genome/length of genome/divided by 129.