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. 2017 Sep 13;17:194. doi: 10.1186/s12866-017-1101-8

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© The Author(s). 2017

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 4 — a Principal Coordinates Analysis PCoA (Unweighted UniFrac) plots of data generated by the three different platforms, analyzed by different bioinformatics pipelines and colored according to treatment group (Prebiotics, control and Salmonella-vaccinated). PERMANOVA F and P values and ANOSIM R and P values are indicated. b Procrustes analysis of sequencing data from the different platforms analyzed with the QIIME2 (de novo OTU picking plus chimera depletion). M and P values are indicated in the figure