Table 2.
High confidence list of 100% novel transcripts along with their genomic co-ordinates, length, strand and phastCons score.
| Gene ID | Transcript ID | Coordinates (mm10) | Length (bp) | Strand | phastCons Score | Novelty Score |
|---|---|---|---|---|---|---|
| MSTRG.10752 | MSTRG.10752.1 | 16:91113662-91114155 | 493 | . | 0.997 | 100 |
| MSTRG.11071 | MSTRG.11071.1 | 17:16557283-16557630 | 347 | . | 0.997 | 100 |
| MSTRG.11709 | MSTRG.11709.2 | 17:39636629-39637143 | 514 | − | 0.997 | 100 |
| MSTRG.13417 | MSTRG.13417.2 | 19:17926989-17927998 | 1009 | + | 0.993 | 100 |
| MSTRG.9039 | MSTRG.9039.1 | 15:31655084-31655385 | 301 | . | 0.990 | 100 |
| MSTRG.17446 | MSTRG.17446.1 | 3:104752371-104752702 | 331 | − | 0.989 | 100 |
| MSTRG.30048 | MSTRG.30048.1 | X:146176602-146177068 | 466 | + | 0.989 | 100 |
| MSTRG.12849 | MSTRG.12849.1 | 18:64611849-64612445 | 596 | − | 0.989 | 100 |
| MSTRG.1816 | MSTRG.1816.1 | 1:178299808-178300378 | 570 | + | 0.987 | 100 |
| MSTRG.18663 | MSTRG.18663.1 | 4:83421622-83422080 | 458 | − | 0.987 | 100 |
| MSTRG.6455 | MSTRG.6455.1 | 12:102866597-102867299 | 702 | . | 0.984 | 100 |
| MSTRG.12840 | MSTRG.12840.1 | 18:63543865-63545205 | 1340 | + | 0.981 | 100 |
| MSTRG.21639 | MSTRG.21639.1 | 5:127954976-127955377 | 401 | . | 0.978 | 100 |
| MSTRG.8143 | MSTRG.8143.1 | 14:33428605-33429024 | 419 | . | 0.973 | 100 |
| MSTRG.13495 | MSTRG.13495.1 | 19:25346816-25347223 | 407 | . | 0.973 | 100 |
| MSTRG.15865 | MSTRG.15865.1 | 2:157528311-157528617 | 306 | . | 0.970 | 100 |
| MSTRG.20543 | MSTRG.20543.1 | 5:46415104-46415426 | 322 | + | 0.970 | 100 |
| MSTRG.6330 | MSTRG.6330.1 | 12:86845755-86846203 | 448 | . | 0.970 | 100 |
| MSTRG.8249 | MSTRG.8249.1 | 14:48695580-48695978 | 398 | . | 0.969 | 100 |
| MSTRG.7535 | MSTRG.7535.1 | 13:91260953-91262729 | 1776 | + | 0.969 | 100 |
| MSTRG.18684 | MSTRG.18684.1 | 4:87103424-87105078 | 1654 | + | 0.967 | 100 |
| MSTRG.18685 | MSTRG.18685.1 | 4:87103426-87105078 | 1652 | − | 0.967 | 100 |
| MSTRG.6715 | MSTRG.6715.1 | 13:8289064-8289370 | 306 | . | 0.966 | 100 |
| MSTRG.7905 | MSTRG.7905.1 | 14:15949235-15949774 | 539 | . | 0.965 | 100 |
| MSTRG.7913 | MSTRG.7913.1 | 14:16451876-16452185 | 309 | . | 0.953 | 100 |
| Gene ID | Transcript ID | Coordinates (mm10) | Length (bp) | Strand | phastCons Score | Novelty Score |
| MSTRG.16504 | MSTRG.16504.1 | 3:36117033-36117334 | 301 | . | 1.000 | 100 |
| MSTRG.18476 | MSTRG.18476.1 | 4:53663579-53663885 | 306 | . | 0.993 | 100 |
| MSTRG.12840 | MSTRG.12840.2 | 18:63543888-63544690 | 802 | + | 0.989 | 100 |
| MSTRG.444 | MSTRG.444.1 | 1:52585218-52585601 | 383 | . | 0.988 | 100 |
| MSTRG.7901 | MSTRG.7901.1 | 14:14447656-14448019 | 363 | . | 0.982 | 100 |
| MSTRG.25445 | MSTRG.25445.1 | 7:127398616-127399037 | 421 | . | 0.980 | 100 |
| MSTRG.3390 | MSTRG.3390.1 | 10:129665538-129665871 | 333 | . | 0.975 | 100 |
| MSTRG.6084 | MSTRG.6084.1 | 12:72048695-72049032 | 337 | . | 0.975 | 100 |
| MSTRG.10567 | MSTRG.10567.1 | 16:53985023-53985331 | 308 | . | 0.973 | 100 |
| MSTRG.10245 | MSTRG.10245.1 | 16:23050282-23050873 | 591 | . | 0.973 | 100 |
| MSTRG.6777 | MSTRG.6777.2 | 13:15119006-15119437 | 431 | + | 0.970 | 100 |
| MSTRG.26441 | MSTRG.26441.1 | 8:72283729-72284163 | 434 | . | 0.969 | 100 |
| MSTRG.10714 | MSTRG.10714.1 | 16:88682165-88682703 | 538 | . | 0.966 | 100 |
| MSTRG.25152 | MSTRG.25152.1 | 7:107951379-107951776 | 397 | . | 0.963 | 100 |
| MSTRG.14539 | MSTRG.14539.1 | 2:34648981-34649511 | 530 | − | 0.956 | 100 |
| MSTRG.6778 | MSTRG.6778.2 | 13:15118406-15118934 | 528 | + | 0.956 | 100 |
| MSTRG.13452 | MSTRG.13452.1 | 19:23166931-23168119 | 1188 | . | 0.956 | 100 |
| MSTRG.12890 | MSTRG.12890.1 | 18:67920731-67921163 | 432 | . | 0.955 | 100 |
| MSTRG.13017 | MSTRG.13017.1 | 18:90311445-90311766 | 321 | . | 0.952 | 100 |
High confidence list of transcripts with transcript length (> 300 & < 10000 bp), phastCons score > 0.95; and average expression > 5.0 TPM in atleast four developmental stages. High confidence list of transcripts unique to developmental stages with transcript length (>300 & < 10000), phastCons score > 0.95; expressed (no exp. threshold, as most of transcripts in this category are poorly expressed) in at most two developmental stages.