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. 2017 Sep 15;83(19):e00888-17. doi: 10.1128/AEM.00888-17

TABLE 4.

Relative abundance of sequences of different phages in whey mixture metavirome sequencesa

BLAST hit (bacterial genus and phage name) Sequence similarity (%)
D2 D3 D4 D5 G1 G2 G3 I2 I3 I4 I5
Lactococcus
    936 group
        P008 15.4 24.2 23.0 15.4 11.3 21.8 16.2 8.4 0.0 0.0 0.0
        jm2 15.6 11.0 11.3 14.0 9.8 14.3 18.3 46.6 0.1 0.0 0.0
        P680 10.7 8.5 9.2 7.3 8.5 7.2 8.1 3.3 0.0 0.0 0.0
        jm3 11.5 9.5 9.3 8.9 18.1 9.1 7.5 4.0 0.0 0.0 0.0
        bIL170 8.4 8.3 9.6 7.0 7.6 9.2 9.2 6.9 0.0 0.0 0.0
        340 7.7 9.0 8.3 5.8 4.6 8.2 5.8 2.4 0.0 0.0 0.0
        φ7 8.3 7.6 8.4 7.3 7.4 9.9 10.1 2.3 0.1 0.2 0.1
        jj50 5.9 7.6 6.4 5.9 4.6 7.1 8.6 4.5 0.0 0.0 0.0
        bIBB29 4.9 5.7 6.3 3.4 2.1 3.3 5.2 0.8 0.0 0.0 0.0
        712 3.6 3.8 3.6 2.6 2.4 3.8 3.2 1.8 0.1 0.0 0.0
        sk1 2.4 2.3 2.2 2.4 1.5 3.5 2.2 0.0 0.1 0.0 0.0
        Q54 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.5 0.0 0.0
        SL4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 5.6 0.0 0.0 0.0
        ASCC191 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.9 0.0 0.0 0.0
        sk1 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.4 0.0 0.0 0.0
    P335 group
        TP901-1 0.3 0.2 0.3 0.2 1.2 0.4 0.1 0.3 2.0 0.0 0.1
        BK5-T 0.0 0.0 0.0 0.1 0.0 0.0 0.0 0.0 1.7 0.0 0.2
        Tuc2009 0.3 0.1 0.1 0.3 0.1 0.4 0.0 0.1 1.6 0.0 0.0
        φLC3 0.4 0.2 0.4 0.4 1.1 0.3 0.1 0.1 0.8 0.0 0.0
        bIL286 0.3 0.1 0.1 0.3 0.3 0.0 0.1 0.1 1.3 0.2 0.2
        r1t 0.5 0.1 0.1 0.4 0.0 0.1 1.2 0.1 0.1 0.0 0.0
        ul36 0.1 0.1 0.1 0.3 0.2 0.4 1.0 0.0 1.5 0.0 0.1
        BM13 0.0 0.0 0.0 0.1 0.0 0.1 0.0 0.0 0.3 0.0 0.0
        P335 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.6 0.1 0.1
        bIL285 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.1 0.6 0.0 0.0
        bIL309 0.0 0.2 0.1 0.0 0.0 0.0 0.0 0.0 0.4 0.0 0.0
    c2 group
        c2 0.6 0.1 0.1 0.3 0.0 0.0 0.1 0.0 27.6 66.9 52.0
        bIL67 1.6 0.0 0.0 0.5 0.5 0.0 0.0 0.0 21.2 31.6 44.9
    Satellite phages
        bIL310 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 12.7 0.3 0.6
        bIL311 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.8 0.0 0.2
        bIL312 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 4.3 0.1 0.2
Leuconostoc
    φLN25 0.0 0.0 0.0 0.1 0.0 0.0 0.5 0.0 0.0 0.0 0.0
    P793 0.0 0.0 0.0 0.2 1.2 0.0 0.4 0.0 0.0 0.0 0.0
    φLN04 0.0 0.0 0.0 0.2 1.4 0.0 0.5 0.0 0.0 0.0 0.0
    Lmd1 0.0 0.0 0.0 0.4 0.8 0.0 0.3 0.0 0.0 0.0 0.0
    φLN03 0.0 0.0 0.0 0.1 0.7 0.0 0.2 0.0 0.0 0.0 0.0
    φLN6B 0.0 0.0 0.0 0.2 0.3 0.0 0.1 0.0 0.0 0.0 0.0
    φLN12 0.0 0.0 0.0 0.0 0.3 0.0 0.1 0.0 0.0 0.0 0.0
Lactobacillus
    Ld25A 0.2 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.1 0.0 0.0
    Lc-Nu 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 0.0 0.1
    φAQ113 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.5 0.0 0.0
Bacillus
    φ29 0.0 0.7 0.5 14.0 12.7 0.0 0.0 5.8 0.0 0.0 0.0
Shigella
    SfIV 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3.9 0.0 0.2
Escherichia
    fiAA91-ss 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3.2 0.0 0.0
Others 0.3 0.1 0.1 1.2 0.5 0.4 0.2 0.7 6.1 0.1 0.3
a

Relative abundance was considered as the fraction of reads affiliated to NCBI's RefSeq database (threshold of 50 on the BLAST score) accessed via the Metavir analysis pipeline. All hits with an abundance level of <0.25% in all metaviromes were excluded for brevity. D, Denmark; G, Germany; I, Ireland.